Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047359_P001 | Maize | nucleus | 94.16 | 93.14 |
| Zm00001d029749_P001 | Maize | nucleus | 91.24 | 91.58 |
| Os10t0537100-00 | Rice | nucleus | 76.64 | 67.31 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 67.52 | 67.27 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 66.79 | 65.83 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 68.25 | 64.26 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 68.25 | 63.82 |
| OQU93364 | Sorghum | nucleus | 57.66 | 47.88 |
| OQU77426 | Sorghum | nucleus | 27.37 | 46.58 |
| CDY67348 | Canola | nucleus | 24.82 | 45.33 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 41.24 | 45.2 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 40.88 | 44.98 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 34.31 | 44.55 |
| KXG19112 | Sorghum | nucleus | 32.48 | 43.41 |
| CDY43060 | Canola | cytosol | 24.09 | 40.49 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 48.18 | 40.0 |
| KXG19111 | Sorghum | nucleus | 34.67 | 39.92 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 33.94 | 39.57 |
| Solyc08g013700.1.1 | Tomato | nucleus | 41.24 | 38.44 |
| Bra040478.1-P | Field mustard | nucleus | 40.15 | 37.54 |
| CDX67872 | Canola | nucleus | 38.69 | 37.19 |
| Bra003482.1-P | Field mustard | nucleus | 38.69 | 37.06 |
| CDY69432 | Canola | nucleus | 37.59 | 37.05 |
| CDX80053 | Canola | nucleus | 40.15 | 37.04 |
| Bra004501.1-P | Field mustard | nucleus | 40.15 | 37.04 |
| PGSC0003DMT400015011 | Potato | nucleus | 41.97 | 36.74 |
| CDY41564 | Canola | nucleus | 39.78 | 36.7 |
| PGSC0003DMT400015010 | Potato | nucleus | 40.15 | 36.67 |
| CDY48008 | Canola | nucleus | 40.51 | 36.51 |
| CDY27515 | Canola | nucleus | 40.51 | 36.51 |
| Solyc08g013690.1.1 | Tomato | nucleus | 43.07 | 36.42 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 37.96 | 36.36 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 35.77 | 36.03 |
| CDY11388 | Canola | nucleus | 37.96 | 35.62 |
| CDX76605 | Canola | nucleus | 37.96 | 35.62 |
| Bra007646.1-P | Field mustard | nucleus | 37.96 | 35.62 |
| AT3G61970.1 | Thale cress | nucleus | 38.69 | 35.45 |
| CDX83351 | Canola | nucleus | 39.78 | 35.39 |
| AT2G46870.1 | Thale cress | nucleus | 39.78 | 35.16 |
| Bra000434.1-P | Field mustard | nucleus | 39.78 | 35.16 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 36.86 | 35.07 |
| CDY50908 | Canola | nucleus | 40.15 | 34.92 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 38.69 | 34.87 |
| EES12712 | Sorghum | nucleus | 53.28 | 34.76 |
| EES13386 | Sorghum | nucleus | 31.75 | 34.39 |
| KXG27771 | Sorghum | nucleus | 34.31 | 34.31 |
| CDY58763 | Canola | nucleus | 39.05 | 33.65 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 41.24 | 33.53 |
| Bra014415.1-P | Field mustard | nucleus | 39.05 | 33.44 |
| CDY58764 | Canola | nucleus | 39.05 | 33.44 |
| CDX90001 | Canola | nucleus | 41.61 | 33.14 |
| CDY15208 | Canola | nucleus | 38.69 | 32.92 |
| Bra033294.1-P | Field mustard | nucleus | 40.88 | 32.56 |
| EES07445 | Sorghum | nucleus | 51.46 | 32.49 |
| Solyc08g083400.2.1 | Tomato | nucleus | 39.42 | 32.34 |
| AT1G01030.1 | Thale cress | nucleus | 41.61 | 31.84 |
| Bra030497.1-P | Field mustard | nucleus | 40.88 | 31.64 |
| KXG22988 | Sorghum | plastid | 36.5 | 31.25 |
| PGSC0003DMT400031863 | Potato | nucleus | 45.26 | 30.54 |
| KRG97268 | Soybean | nucleus | 44.53 | 29.54 |
| KRH68988 | Soybean | nucleus | 44.53 | 29.05 |
| AT4G01500.1 | Thale cress | nucleus | 33.94 | 27.93 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 45.62 | 27.41 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 45.62 | 27.11 |
| CDX97251 | Canola | nucleus | 31.75 | 25.66 |
| EES14747 | Sorghum | plastid | 25.91 | 25.45 |
| Bra008552.1-P | Field mustard | nucleus | 31.39 | 25.44 |
| CDY07140 | Canola | nucleus | 28.1 | 25.16 |
| Bra037417.1-P | Field mustard | nucleus | 28.47 | 25.16 |
| CDY49614 | Canola | nucleus | 28.47 | 25.16 |
| KRH47753 | Soybean | nucleus | 45.26 | 24.8 |
| KXG22484 | Sorghum | nucleus, plastid | 34.67 | 23.28 |
| KXG24821 | Sorghum | nucleus | 23.72 | 22.81 |
| EES03472 | Sorghum | nucleus, plastid | 33.58 | 22.28 |
| EES02511 | Sorghum | nucleus | 30.66 | 21.65 |
| KRH06334 | Soybean | nucleus | 45.26 | 21.31 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:8062866 | InterPro:B3_DNA-bd | UniProt:C5WUE4 | InterPro:DNA-bd_pseudobarrel_sf |
| EnsemblPlants:EER92015 | ProteinID:EER92015 | ProteinID:EER92015.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF8 |
| SMART:SM01019 | EnsemblPlantsGene:SORBI_3001G313800 | SUPFAM:SSF101936 | UniParc:UPI0001A825B2 | RefSeq:XP_002465017.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:60096593..60097417
Molecular Weight (calculated)
29621.3 Da
IEP (calculated)
10.447
GRAVY (calculated)
-0.219
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTPAHARV VEDSERPRGG VAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD ASAAAAAAAA GGGKGLVLSF EDRAGKAWRF RYSYWNSSQS
101: YVMTKGWSRF VKEKRLGAGD TVLFARGAGG EGAPRGRFFI DFRRRRQDLA FLQPPLASAQ RLLPLPSVPI CPWQDYGAST PAPSRHVLFL RPQVPAAVVL
201: TSMPVHVAAS AVEATRSKRV RLFGVNLDCP PDAAEDGATV TRRTASTLLQ LPSPSSSTSS STAGKDACSL DLGL
101: YVMTKGWSRF VKEKRLGAGD TVLFARGAGG EGAPRGRFFI DFRRRRQDLA FLQPPLASAQ RLLPLPSVPI CPWQDYGAST PAPSRHVLFL RPQVPAAVVL
201: TSMPVHVAAS AVEATRSKRV RLFGVNLDCP PDAAEDGATV TRRTASTLLQ LPSPSSSTSS STAGKDACSL DLGL
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.