Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002562_P001 | Maize | nucleus | 89.29 | 91.69 |
| EES07445 | Sorghum | nucleus | 65.48 | 63.36 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 32.38 | 54.62 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 32.38 | 54.4 |
| EER92015 | Sorghum | nucleus | 34.76 | 53.28 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 25.71 | 51.18 |
| OQU93364 | Sorghum | nucleus | 40.0 | 50.91 |
| CDY67348 | Canola | nucleus | 17.38 | 48.67 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 37.86 | 48.18 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 26.43 | 47.23 |
| OQU77426 | Sorghum | nucleus | 18.1 | 47.2 |
| KXG19112 | Sorghum | nucleus | 22.38 | 45.85 |
| Bra004501.1-P | Field mustard | nucleus | 32.38 | 45.79 |
| CDX80053 | Canola | nucleus | 32.38 | 45.79 |
| Bra040478.1-P | Field mustard | nucleus | 31.9 | 45.73 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.52 | 45.59 |
| CDY41564 | Canola | nucleus | 31.9 | 45.12 |
| Solyc08g013700.1.1 | Tomato | nucleus | 31.19 | 44.56 |
| CDY48008 | Canola | nucleus | 32.14 | 44.41 |
| PGSC0003DMT400015010 | Potato | nucleus | 31.67 | 44.33 |
| CDY27515 | Canola | nucleus | 31.9 | 44.08 |
| PGSC0003DMT400015011 | Potato | nucleus | 32.38 | 43.45 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 31.43 | 43.42 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 29.52 | 43.36 |
| CDY50908 | Canola | nucleus | 32.38 | 43.17 |
| CDX67872 | Canola | nucleus | 29.29 | 43.16 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 29.52 | 43.06 |
| Bra003482.1-P | Field mustard | nucleus | 29.29 | 43.01 |
| AT2G46870.1 | Thale cress | nucleus | 31.67 | 42.9 |
| Solyc08g013690.1.1 | Tomato | nucleus | 33.1 | 42.9 |
| Bra000434.1-P | Field mustard | nucleus | 31.43 | 42.58 |
| CDY43060 | Canola | cytosol | 16.43 | 42.33 |
| CDX83351 | Canola | nucleus | 30.71 | 41.88 |
| Solyc08g083400.2.1 | Tomato | nucleus | 33.1 | 41.62 |
| KXG19111 | Sorghum | nucleus | 23.57 | 41.6 |
| CDY69432 | Canola | nucleus | 27.14 | 41.01 |
| AT3G61970.1 | Thale cress | nucleus | 29.05 | 40.8 |
| CDX76605 | Canola | nucleus | 28.33 | 40.75 |
| CDY11388 | Canola | nucleus | 28.33 | 40.75 |
| Bra007646.1-P | Field mustard | nucleus | 28.33 | 40.75 |
| CDY58763 | Canola | nucleus | 30.48 | 40.25 |
| CDY58764 | Canola | nucleus | 30.48 | 40.0 |
| Bra014415.1-P | Field mustard | nucleus | 30.48 | 40.0 |
| CDY15208 | Canola | nucleus | 29.52 | 38.51 |
| CDX90001 | Canola | nucleus | 31.43 | 38.37 |
| Bra033294.1-P | Field mustard | nucleus | 30.95 | 37.79 |
| KRH68988 | Soybean | nucleus | 37.38 | 37.38 |
| EES13386 | Sorghum | nucleus | 22.38 | 37.15 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 29.76 | 37.09 |
| PGSC0003DMT400031863 | Potato | nucleus | 35.71 | 36.95 |
| KRG97268 | Soybean | nucleus | 36.19 | 36.8 |
| AT1G01030.1 | Thale cress | nucleus | 30.95 | 36.31 |
| KXG27771 | Sorghum | nucleus | 23.33 | 35.77 |
| Bra030497.1-P | Field mustard | nucleus | 30.0 | 35.59 |
| KRH47753 | Soybean | nucleus | 40.48 | 34.0 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 36.9 | 33.62 |
| KXG22988 | Sorghum | plastid | 24.76 | 32.5 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 35.0 | 32.24 |
| AT4G01500.1 | Thale cress | nucleus | 24.29 | 30.63 |
| KRH06334 | Soybean | nucleus | 40.71 | 29.38 |
| CDX97251 | Canola | nucleus | 23.1 | 28.61 |
| Bra008552.1-P | Field mustard | nucleus | 22.86 | 28.4 |
| EES03472 | Sorghum | nucleus, plastid | 27.86 | 28.33 |
| CDY07140 | Canola | nucleus | 20.24 | 27.78 |
| KXG22484 | Sorghum | nucleus, plastid | 26.67 | 27.45 |
| CDY49614 | Canola | nucleus | 20.24 | 27.42 |
| Bra037417.1-P | Field mustard | nucleus | 20.24 | 27.42 |
| EES14747 | Sorghum | plastid | 17.38 | 26.16 |
| EES02511 | Sorghum | nucleus | 22.86 | 24.74 |
| KXG24821 | Sorghum | nucleus | 15.95 | 23.51 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:8060436 | InterPro:B3_DNA-bd | UniProt:C5YEI6 | InterPro:DNA-bd_pseudobarrel_sf |
| EnsemblPlants:EES12712 | ProteinID:EES12712 | ProteinID:EES12712.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF5 |
| SMART:SM01019 | EnsemblPlantsGene:SORBI_3006G190400 | SUPFAM:SSF101936 | UniParc:UPI0001A877A6 | RefSeq:XP_002448384.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:-:54458421..54463486
Molecular Weight (calculated)
44749.2 Da
IEP (calculated)
6.329
GRAVY (calculated)
-0.525
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFASSSSRF SKEEDEEEEG EEEDEEASPR EIPFMTAAAA TADTGPAAAS SSSPSAAGAS ASASGSAAAL RSGDGAGASG SGGGGGGSDD VEVIEKEHMF
101: DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAG EAARDRLFID
201: WKRRADSRDP HRMPRLPLPM APVASPYGLG PWGGGAGGFF MPPAPPATLY EHHRFRQALD FRNINAAAAP ARQLLFFGSQ GMPPRASMPL QQQQPQPQPS
301: LPPPPPPLHS IMMVQPGSPA VTHGLPMVLD SVPLVNSPTA AAKRVRLFGV NLDNPQQGSS AESSQDANAL SLRMPGWQRP GPLRFFESPQ RGAAESSAAS
401: SPSSSSSSKR EAHSSLDLDL
101: DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAG EAARDRLFID
201: WKRRADSRDP HRMPRLPLPM APVASPYGLG PWGGGAGGFF MPPAPPATLY EHHRFRQALD FRNINAAAAP ARQLLFFGSQ GMPPRASMPL QQQQPQPQPS
301: LPPPPPPLHS IMMVQPGSPA VTHGLPMVLD SVPLVNSPTA AAKRVRLFGV NLDNPQQGSS AESSQDANAL SLRMPGWQRP GPLRFFESPQ RGAAESSAAS
401: SPSSSSSSKR EAHSSLDLDL
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.