CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19112	Sorghum	nucleus	45.96	36.1
KXG19111	Sorghum	nucleus	44.1	29.83
EES13386	Sorghum	nucleus	45.34	28.85
EER92015	Sorghum	nucleus	46.58	27.37
Os02t0764100-01	Rice	mitochondrion	40.99	26.09
TraesCS4D01G322500.1	Wheat	nucleus	47.83	25.25
TraesCS4B01G325600.1	Wheat	nucleus	47.83	25.0
KXG27771	Sorghum	nucleus	41.61	24.45
HORVU3Hr1G010100.2	Barley	nucleus	48.45	24.38
OQU93364	Sorghum	nucleus	49.69	24.24
TraesCS3A01G053900.1	Wheat	nucleus	47.83	24.06
TraesCSU01G179500.1	Wheat	nucleus	47.2	23.75
KXG22988	Sorghum	plastid	44.72	22.5
HORVU3Hr1G010060.1	Barley	nucleus	48.45	22.16
HORVU4Hr1G082090.2	Barley	mitochondrion	46.58	21.8
EES02511	Sorghum	nucleus	52.17	21.65
KXG22484	Sorghum	nucleus, plastid	47.2	18.63
EES07445	Sorghum	nucleus	49.69	18.43
EES14747	Sorghum	plastid	31.68	18.28
EES12712	Sorghum	nucleus	47.2	18.1
EES03472	Sorghum	nucleus, plastid	45.96	17.92
KXG24821	Sorghum	nucleus	28.57	16.14
HORVU3Hr1G010260.2	Barley	mitochondrion	15.53	12.63

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	UniProt:A0A1Z5R241	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:OQU77426	ProteinID:OQU77426
ProteinID:OQU77426.1	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM01019
EnsemblPlantsGene:SORBI_3009G048201	SUPFAM:SSF101936	UniParc:UPI000B8B9653	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:4604148..4605278

Molecular Weight (calculated)

17672.7 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.466

Length

161 amino acids

Sequence
(BLAST)

001: MFEKAVTPSD VGRLNRMVVP KLHAEKHFPR IEEAADAAPV LLAFEDVGVG GGTGKVWRFR YSYWSSSQSY VLTRGWSRFV REKGLAAGDT VAFSQAAITD
101: DAETTTDVKR RRMFIECRKR KRKDDDGCSD GNDGDHCPDD GGERVVRLFG ANIAAAAIGA S

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.