Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G010100.2 | Barley | nucleus | 96.88 | 96.88 |
| TraesCS3A01G053900.1 | Wheat | nucleus | 96.88 | 96.88 |
| HORVU3Hr1G010060.1 | Barley | nucleus | 96.88 | 88.07 |
| TraesCS4B01G325600.1 | Wheat | nucleus | 81.88 | 85.06 |
| TraesCS4D01G322500.1 | Wheat | nucleus | 80.94 | 84.92 |
| TraesCSU01G231000.1 | Wheat | mitochondrion, nucleus | 38.75 | 56.88 |
| TraesCSU01G227200.1 | Wheat | nucleus | 59.69 | 54.42 |
| OQU77426 | Sorghum | nucleus | 23.75 | 47.2 |
| Os02t0764100-01 | Rice | mitochondrion | 21.25 | 26.88 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 |
| PFAM:PF00847 | PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF9 |
| SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCSU01G179500 | EnsemblPlants:TraesCSU01G179500.1 |
| TIGR:cd00018 | TIGR:cd10017 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:-:270381745..270382834
Molecular Weight (calculated)
34818.2 Da
IEP (calculated)
5.690
GRAVY (calculated)
-0.677
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGKPTNHG MEDDNDMEYS SAESGAEDAA EPSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAVRAYDVAA LRFRGPDAVI
101: NHQRPTAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QQAEKHFPPT
201: TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV
301: AVKLFGVDIA GGGMAGSSGG
101: NHQRPTAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QQAEKHFPPT
201: TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV
301: AVKLFGVDIA GGGMAGSSGG
001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
Arabidopsis Description
RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.