Factsheet for TraesCS3A01G053900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G179500.1	Wheat	nucleus	96.88	96.88
HORVU3Hr1G010100.2	Barley	nucleus	95.94	95.94
HORVU3Hr1G010060.1	Barley	nucleus	95.94	87.22
TraesCS4B01G325600.1	Wheat	nucleus	81.56	84.74
TraesCS4D01G322500.1	Wheat	nucleus	80.31	84.26
TraesCS3A01G054000.1	Wheat	nucleus	61.56	55.34
TraesCS5A01G497900.1	Wheat	nucleus	59.69	51.9
OQU77426	Sorghum	nucleus	24.06	47.83
TraesCS3A01G259900.1	Wheat	nucleus	51.88	44.27
TraesCS1A01G372300.1	Wheat	nucleus	52.19	42.6
TraesCS7A01G461000.1	Wheat	nucleus	24.38	40.0
TraesCS1A01G372200.1	Wheat	nucleus	50.62	39.23
TraesCS7A01G020800.1	Wheat	nucleus	23.44	37.88
TraesCS4A01G472700.1	Wheat	nucleus	25.31	37.33
TraesCS1A01G372100.1	Wheat	nucleus	50.62	36.65
TraesCS7A01G020700.1	Wheat	nucleus	24.38	36.28
TraesCS2A01G460700.1	Wheat	nucleus	25.94	31.2
TraesCS5A01G127100.1	Wheat	nucleus	25.94	31.2
TraesCS1A01G200500.1	Wheat	nucleus	25.62	29.5
TraesCS4A01G198300.2	Wheat	nucleus	25.62	29.39
Os02t0764100-01	Rice	mitochondrion	21.56	27.27
TraesCS5A01G516600.1	Wheat	nucleus	25.94	26.18
TraesCS2A01G394700.1	Wheat	nucleus	31.88	25.25
TraesCS6A01G259600.1	Wheat	nucleus	29.69	22.95

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3A01G053900	EnsemblPlants:TraesCS3A01G053900.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:30996675..30997935

Molecular Weight (calculated)

34814.2 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.635

Length

320 amino acids

Sequence
(BLAST)

001: MASGKATNHG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGQW GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI
101: NFQRPPAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT
201: TAAATGSNCK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISNENETGHV
301: AVKLFGVDIA GGGMVGSSGG

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.