Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G215000.1 | Wheat | nucleus | 93.88 | 94.91 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 96.04 | 91.75 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 95.32 | 90.44 |
| EER92015 | Sorghum | nucleus | 65.83 | 66.79 |
| Zm00001d029749_P001 | Maize | nucleus | 64.75 | 65.93 |
| Zm00001d047359_P001 | Maize | nucleus | 65.11 | 65.34 |
| Os10t0537100-00 | Rice | nucleus | 70.5 | 62.82 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 52.88 | 46.37 |
| CDY67348 | Canola | nucleus | 24.1 | 44.67 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 31.65 | 44.44 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 39.57 | 44.18 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 30.94 | 44.1 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 32.73 | 43.13 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 33.45 | 42.86 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 38.49 | 42.8 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 32.37 | 41.86 |
| CDY43060 | Canola | cytosol | 23.02 | 39.26 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 45.68 | 38.48 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 32.01 | 37.87 |
| Solyc08g013700.1.1 | Tomato | nucleus | 39.93 | 37.76 |
| Bra040478.1-P | Field mustard | nucleus | 39.57 | 37.54 |
| CDX80053 | Canola | nucleus | 39.57 | 37.04 |
| Bra004501.1-P | Field mustard | nucleus | 39.57 | 37.04 |
| CDY41564 | Canola | nucleus | 39.21 | 36.7 |
| PGSC0003DMT400015010 | Potato | nucleus | 39.57 | 36.67 |
| CDY27515 | Canola | nucleus | 39.57 | 36.18 |
| CDY48008 | Canola | nucleus | 39.57 | 36.18 |
| Bra003482.1-P | Field mustard | nucleus | 37.05 | 36.01 |
| CDX67872 | Canola | nucleus | 36.69 | 35.79 |
| CDY69432 | Canola | nucleus | 35.61 | 35.61 |
| CDX83351 | Canola | nucleus | 39.21 | 35.39 |
| Bra000434.1-P | Field mustard | nucleus | 39.21 | 35.16 |
| AT2G46870.1 | Thale cress | nucleus | 39.21 | 35.16 |
| PGSC0003DMT400015011 | Potato | nucleus | 39.57 | 35.14 |
| AT3G61970.1 | Thale cress | nucleus | 37.77 | 35.12 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 33.45 | 34.96 |
| CDY11388 | Canola | nucleus | 36.69 | 34.93 |
| CDX76605 | Canola | nucleus | 36.69 | 34.93 |
| Bra007646.1-P | Field mustard | nucleus | 36.69 | 34.93 |
| CDY50908 | Canola | nucleus | 39.57 | 34.92 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 33.09 | 34.59 |
| Solyc08g013690.1.1 | Tomato | nucleus | 39.93 | 34.26 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 33.45 | 34.19 |
| CDY15208 | Canola | nucleus | 39.57 | 34.16 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 33.81 | 33.69 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 50.0 | 33.57 |
| CDX90001 | Canola | nucleus | 41.37 | 33.43 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 48.56 | 33.42 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 34.53 | 33.33 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 34.17 | 33.22 |
| CDY58763 | Canola | nucleus | 37.77 | 33.02 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 35.97 | 32.89 |
| Bra033294.1-P | Field mustard | nucleus | 40.65 | 32.85 |
| Bra014415.1-P | Field mustard | nucleus | 37.41 | 32.5 |
| CDY58764 | Canola | nucleus | 37.41 | 32.5 |
| Bra030497.1-P | Field mustard | nucleus | 41.01 | 32.2 |
| AT1G01030.1 | Thale cress | nucleus | 41.01 | 31.84 |
| Solyc08g083400.2.1 | Tomato | nucleus | 38.13 | 31.74 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 37.77 | 31.16 |
| PGSC0003DMT400031863 | Potato | nucleus | 42.81 | 29.31 |
| AT4G01500.1 | Thale cress | nucleus | 34.53 | 28.83 |
| KRG97268 | Soybean | nucleus | 42.09 | 28.33 |
| KRH68988 | Soybean | nucleus | 42.09 | 27.86 |
| CDY07140 | Canola | nucleus | 29.5 | 26.8 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 44.24 | 26.68 |
| CDX97251 | Canola | nucleus | 32.37 | 26.55 |
| Bra037417.1-P | Field mustard | nucleus | 29.5 | 26.45 |
| CDY49614 | Canola | nucleus | 29.5 | 26.45 |
| Bra008552.1-P | Field mustard | nucleus | 32.01 | 26.33 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 43.17 | 26.32 |
| TraesCS3A01G053900.1 | Wheat | nucleus | 29.5 | 25.62 |
| TraesCS3A01G259900.1 | Wheat | nucleus | 32.73 | 24.27 |
| KRH47753 | Soybean | nucleus | 43.17 | 24.0 |
| TraesCS1A01G372300.1 | Wheat | nucleus | 33.81 | 23.98 |
| TraesCS3A01G054000.1 | Wheat | nucleus | 30.58 | 23.88 |
| TraesCS5A01G497900.1 | Wheat | nucleus | 30.22 | 22.83 |
| TraesCS1A01G372200.1 | Wheat | nucleus | 33.45 | 22.52 |
| TraesCS1A01G372100.1 | Wheat | nucleus | 33.09 | 20.81 |
| KRH06334 | Soybean | nucleus | 42.09 | 20.1 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G200500.1 | EnsemblPlantsGene:TraesCS1A01G200500 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF8 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:361173562..361174437
Molecular Weight (calculated)
30219.9 Da
IEP (calculated)
9.913
GRAVY (calculated)
-0.318
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSPTAPAG GEESERVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY
101: VMTKGWSRFV KEKSLGAGDT VLFGRGVGDG AARDRLYIDF RRRRPAESYS ATATSSLSHR LPLLPSVPFC PWRRDFGTTY GSNRHVLFLR QQVPAAVVLK
201: SVPVRAAASV LEPPARPMPK RVRLFGVNLD SPATEDDGTC GVTQTVTSTL LQQLLPSPSS STSSTAGKER QCSLDLGL
101: VMTKGWSRFV KEKSLGAGDT VLFGRGVGDG AARDRLYIDF RRRRPAESYS ATATSSLSHR LPLLPSVPFC PWRRDFGTTY GSNRHVLFLR QQVPAAVVLK
201: SVPVRAAASV LEPPARPMPK RVRLFGVNLD SPATEDDGTC GVTQTVTSTL LQQLLPSPSS STSSTAGKER QCSLDLGL
001: MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDSN KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD
101: KKLDAGDIVS FQRDSCNKDK LYIDWRRRPK IPDHHHQQFA GAMFPRFYTF PHPQMPTNYE THNLYHRFHQ RDLGIGYYVR SMERSHPTAV IESVPVMMQR
201: RAQVASMASR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSIPRGRV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK PSLSFDLDR
101: KKLDAGDIVS FQRDSCNKDK LYIDWRRRPK IPDHHHQQFA GAMFPRFYTF PHPQMPTNYE THNLYHRFHQ RDLGIGYYVR SMERSHPTAV IESVPVMMQR
201: RAQVASMASR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSIPRGRV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK PSLSFDLDR
Arabidopsis Description
NGA2NGA2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7R1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.