Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43060 | Canola | cytosol | 76.0 | 69.94 |
| Zm00001d035982_P001 | Maize | nucleus | 26.67 | 45.45 |
| CDX97251 | Canola | nucleus | 78.0 | 34.51 |
| CDY07140 | Canola | nucleus | 68.67 | 33.66 |
| CDY49614 | Canola | nucleus | 67.33 | 32.58 |
| AT4G01500.1 | Thale cress | nucleus | 67.33 | 30.33 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 40.0 | 30.3 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 39.33 | 30.26 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 39.33 | 30.1 |
| Zm00001d048815_P001 | Maize | nucleus | 46.0 | 29.74 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 38.67 | 29.59 |
| Os06t0107800-02 | Rice | nucleus | 38.67 | 29.15 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 38.67 | 29.0 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 40.67 | 28.11 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 40.0 | 27.91 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 40.0 | 27.65 |
| Zm00001d010077_P001 | Maize | nucleus | 47.33 | 27.41 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 40.0 | 27.27 |
| CDY43751 | Canola | nucleus | 42.67 | 26.34 |
| CDY62470 | Canola | nucleus | 40.0 | 26.32 |
| CDX84162 | Canola | nucleus | 42.0 | 25.93 |
| KXG19112 | Sorghum | nucleus | 35.33 | 25.85 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 35.33 | 25.73 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 42.67 | 25.6 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 36.0 | 25.59 |
| CDX75073 | Canola | nucleus | 42.0 | 25.4 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 42.0 | 25.3 |
| CDY69432 | Canola | nucleus | 46.67 | 25.18 |
| Zm00001d029749_P001 | Maize | nucleus | 45.33 | 24.91 |
| EER92015 | Sorghum | nucleus | 45.33 | 24.82 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 45.33 | 24.73 |
| CDY41564 | Canola | nucleus | 48.67 | 24.58 |
| Os04t0581400-01 | Rice | nucleus | 48.0 | 24.57 |
| CDX67872 | Canola | nucleus | 46.67 | 24.56 |
| Zm00001d024103_P001 | Maize | nucleus | 36.67 | 24.55 |
| Zm00001d047359_P001 | Maize | nucleus | 45.33 | 24.55 |
| CDX76605 | Canola | nucleus | 47.33 | 24.32 |
| CDY11388 | Canola | nucleus | 47.33 | 24.32 |
| CDX80053 | Canola | nucleus | 48.0 | 24.24 |
| CDY08512 | Canola | nucleus | 40.0 | 24.19 |
| CDX73868 | Canola | nucleus | 38.0 | 24.15 |
| Zm00001d035903_P001 | Maize | nucleus | 36.0 | 24.11 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 44.67 | 24.1 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 44.0 | 24.09 |
| KXG19111 | Sorghum | nucleus | 38.0 | 23.95 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 37.33 | 23.83 |
| EES13386 | Sorghum | nucleus | 40.0 | 23.72 |
| CDX83351 | Canola | nucleus | 48.67 | 23.7 |
| Zm00001d024545_P001 | Maize | nucleus | 39.33 | 23.69 |
| CDY27515 | Canola | nucleus | 48.0 | 23.68 |
| CDY48008 | Canola | nucleus | 48.0 | 23.68 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 35.33 | 23.66 |
| CDY50908 | Canola | nucleus | 49.33 | 23.49 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 45.33 | 23.37 |
| CDY01036 | Canola | nucleus | 40.0 | 23.35 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 45.33 | 23.21 |
| Os03t0120900-01 | Rice | nucleus | 48.0 | 23.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.67 | 22.82 |
| CDY15208 | Canola | nucleus | 48.67 | 22.67 |
| CDY58763 | Canola | nucleus | 48.0 | 22.64 |
| CDY58764 | Canola | nucleus | 48.0 | 22.5 |
| CDY47260 | Canola | nucleus | 40.0 | 22.47 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 47.33 | 22.26 |
| CDX80996 | Canola | nucleus | 40.67 | 22.18 |
| Os10t0537100-00 | Rice | nucleus | 46.0 | 22.12 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 46.67 | 22.08 |
| OQU93364 | Sorghum | nucleus | 48.0 | 21.82 |
| Zm00001d027409_P001 | Maize | nucleus | 47.33 | 21.71 |
| Os08t0157700-00 | Rice | nucleus | 41.33 | 21.6 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 47.33 | 21.52 |
| CDX90001 | Canola | nucleus | 48.67 | 21.22 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 46.67 | 20.53 |
| CDX97996 | Canola | nucleus | 44.0 | 20.31 |
| CDY61361 | Canola | nucleus | 44.0 | 20.18 |
| CDY40973 | Canola | nucleus | 42.0 | 20.0 |
| CDY58354 | Canola | nucleus | 43.33 | 19.94 |
| CDY72302 | Canola | nucleus | 43.33 | 19.94 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 38.0 | 19.93 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 44.67 | 19.88 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 36.0 | 19.85 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 40.0 | 19.74 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 37.33 | 19.44 |
| CDY24391 | Canola | nucleus | 43.33 | 19.23 |
| CDX99755 | Canola | nucleus | 43.33 | 19.12 |
| CDY36099 | Canola | nucleus | 43.33 | 18.57 |
| CDX81561 | Canola | nucleus | 42.0 | 18.37 |
| CDY45849 | Canola | nucleus, plastid | 42.67 | 18.29 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 48.67 | 18.07 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 48.67 | 17.85 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 48.67 | 17.85 |
| Zm00001d002562_P001 | Maize | nucleus | 48.67 | 17.85 |
| Zm00001d026005_P001 | Maize | nucleus | 48.0 | 17.82 |
| CDX84999 | Canola | nucleus | 42.0 | 17.8 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 48.0 | 17.6 |
| CDY16133 | Canola | nucleus | 42.0 | 17.6 |
| Os02t0683500-01 | Rice | nucleus | 48.0 | 17.48 |
| EES12712 | Sorghum | nucleus | 48.67 | 17.38 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 47.33 | 17.36 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 47.33 | 17.15 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 47.33 | 17.15 |
| CDX98911 | Canola | nucleus | 26.0 | 16.32 |
| CDY70080 | Canola | nucleus | 26.0 | 16.32 |
| Zm00001d051471_P001 | Maize | nucleus | 45.33 | 16.19 |
| Zm00001d017618_P001 | Maize | nucleus | 45.33 | 16.11 |
| EES07445 | Sorghum | nucleus | 46.0 | 15.9 |
| CDY29599 | Canola | nucleus | 31.33 | 14.46 |
| CDY37109 | Canola | nucleus | 32.0 | 14.41 |
| CDY29620 | Canola | nucleus | 32.67 | 14.24 |
| CDY65812 | Canola | nucleus | 26.67 | 14.23 |
| CDY35575 | Canola | nucleus | 32.67 | 14.2 |
| CDY22826 | Canola | nucleus | 32.0 | 14.2 |
| CDY22814 | Canola | nucleus | 31.33 | 13.95 |
| CDX83547 | Canola | nucleus | 30.0 | 13.89 |
| CDY46564 | Canola | nucleus | 31.33 | 13.86 |
| CDY51249 | Canola | nucleus | 31.33 | 13.86 |
| CDY25209 | Canola | nucleus | 31.33 | 13.24 |
| CDY22801 | Canola | nucleus | 30.67 | 13.22 |
| CDY37130 | Canola | nucleus | 29.33 | 12.98 |
| CDY37108 | Canola | nucleus, plastid | 28.0 | 12.24 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078JIH1 | UniProt:A0A078JIH1 | InterPro:B3_DNA-bd | EnsemblPlants:CDY67348 |
| ProteinID:CDY67348 | ProteinID:CDY67348.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00062787001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 |
| SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EC06DA | SEG:seg | : | : |
Description
BnaC03g71880DBnaC03g71880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIH1]
Coordinates
chrLK036008:-:9484..9966
Molecular Weight (calculated)
17172.1 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.757
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTRTTPVQ EPTETGASGS GNNNFNSAVG EHMFDKVLTP SDVGKLNRLV IPKQHAENYF PLEDNQTGTV LDFEDRTGKI SQSYVMTKGW CRFVKEMKLE
101: SGDIVSFHRG YVPDDNEPEK RKNIFFIDWR HRANTNLVHN INYHHYPLLG
101: SGDIVSFHRG YVPDDNEPEK RKNIFFIDWR HRANTNLVHN INYHHYPLLG
001: MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
Arabidopsis Description
NGA4NGA4 [Source:UniProtKB/TrEMBL;Acc:A0A178V2Z9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.