Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034828.1-P | Field mustard | nucleus | 99.19 | 95.35 |
| CDY01036 | Canola | nucleus | 95.97 | 92.61 |
| CDX73868 | Canola | nucleus | 75.0 | 78.81 |
| CDY62470 | Canola | nucleus | 61.29 | 66.67 |
| CDY47260 | Canola | nucleus | 58.87 | 54.68 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 80.24 | 53.64 |
| CDY43751 | Canola | nucleus | 52.42 | 53.5 |
| CDX75073 | Canola | nucleus | 52.02 | 52.02 |
| CDX84162 | Canola | nucleus | 50.4 | 51.44 |
| CDX98911 | Canola | nucleus | 48.79 | 50.63 |
| CDY70080 | Canola | nucleus | 48.79 | 50.63 |
| CDX80996 | Canola | nucleus | 54.03 | 48.73 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 35.89 | 46.11 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 36.29 | 44.78 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 44.35 | 41.51 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 44.35 | 41.35 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 41.13 | 41.3 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 43.55 | 40.6 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 39.52 | 40.5 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 43.15 | 40.07 |
| CDY67348 | Canola | nucleus | 24.19 | 40.0 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 42.34 | 39.47 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 44.35 | 39.43 |
| KXG27771 | Sorghum | nucleus | 43.55 | 39.42 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 41.94 | 38.95 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 44.76 | 38.95 |
| GSMUA_Achr11P... | Banana | nucleus | 29.03 | 38.92 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 43.55 | 38.71 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 43.95 | 38.65 |
| KRH67965 | Soybean | nucleus | 43.95 | 37.85 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 24.6 | 37.65 |
| Os11t0156000-01 | Rice | nucleus | 42.34 | 37.63 |
| Zm00001d023446_P001 | Maize | nucleus | 42.34 | 37.1 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 41.53 | 36.92 |
| KRG96220 | Soybean | nucleus | 43.15 | 35.79 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 39.52 | 35.77 |
| Solyc09g010230.1.1 | Tomato | nucleus | 49.19 | 35.36 |
| Zm00001d052591_P001 | Maize | nucleus | 43.55 | 35.18 |
| KRH32791 | Soybean | nucleus | 47.58 | 35.01 |
| CDY43060 | Canola | cytosol | 22.98 | 34.97 |
| KRH72242 | Soybean | nucleus | 48.39 | 34.88 |
| KXG22988 | Sorghum | plastid | 44.35 | 34.38 |
| PGSC0003DMT400023077 | Potato | nucleus | 46.37 | 34.33 |
| CDY69432 | Canola | nucleus | 34.68 | 30.94 |
| CDY48008 | Canola | nucleus | 37.9 | 30.92 |
| CDY27515 | Canola | nucleus | 37.9 | 30.92 |
| CDX67872 | Canola | nucleus | 35.08 | 30.53 |
| CDX76605 | Canola | nucleus | 35.89 | 30.48 |
| CDY11388 | Canola | nucleus | 35.89 | 30.48 |
| CDY41564 | Canola | nucleus | 36.29 | 30.3 |
| CDX80053 | Canola | nucleus | 36.29 | 30.3 |
| CDX83351 | Canola | nucleus | 37.1 | 29.87 |
| CDY50908 | Canola | nucleus | 37.9 | 29.84 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 23.79 | 28.1 |
| CDY58763 | Canola | nucleus | 35.48 | 27.67 |
| CDY58764 | Canola | nucleus | 35.48 | 27.5 |
| CDX97996 | Canola | nucleus | 33.87 | 25.85 |
| CDY72302 | Canola | nucleus | 33.87 | 25.77 |
| CDY58354 | Canola | nucleus | 33.87 | 25.77 |
| CDY61361 | Canola | nucleus | 33.87 | 25.69 |
| CDY15208 | Canola | nucleus | 32.66 | 25.16 |
| CDX90001 | Canola | nucleus | 34.68 | 25.0 |
| CDX81561 | Canola | nucleus | 34.27 | 24.78 |
| CDY45849 | Canola | nucleus, plastid | 34.68 | 24.57 |
| CDY24391 | Canola | nucleus | 33.47 | 24.56 |
| CDY07140 | Canola | nucleus | 30.24 | 24.51 |
| CDY49614 | Canola | nucleus | 30.24 | 24.19 |
| CDX97251 | Canola | nucleus | 33.06 | 24.19 |
| CDY40973 | Canola | nucleus | 30.24 | 23.81 |
| CDY36099 | Canola | nucleus | 33.47 | 23.71 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 32.26 | 23.53 |
| CDX84999 | Canola | nucleus | 33.47 | 23.45 |
| CDY16133 | Canola | nucleus | 33.06 | 22.91 |
| CDX99755 | Canola | nucleus | 30.24 | 22.06 |
| CDX83547 | Canola | nucleus | 23.79 | 18.21 |
| CDY29599 | Canola | nucleus | 23.79 | 18.15 |
| CDY37109 | Canola | nucleus | 24.19 | 18.02 |
| CDY65812 | Canola | nucleus | 20.16 | 17.79 |
| CDY22814 | Canola | nucleus | 23.79 | 17.51 |
| CDY29620 | Canola | nucleus | 24.19 | 17.44 |
| CDY51249 | Canola | nucleus | 23.79 | 17.4 |
| CDY46564 | Canola | nucleus | 23.79 | 17.4 |
| CDY22826 | Canola | nucleus | 23.39 | 17.16 |
| CDY35575 | Canola | nucleus | 23.79 | 17.1 |
| CDY37130 | Canola | nucleus | 22.98 | 16.81 |
| CDY25209 | Canola | nucleus | 22.98 | 16.06 |
| CDY22801 | Canola | nucleus | 20.97 | 14.94 |
| CDY37108 | Canola | nucleus, plastid | 19.76 | 14.29 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078F5Z3 | UniProt:A0A078F5Z3 | InterPro:B3_DNA-bd | EnsemblPlants:CDY08512 |
| ProteinID:CDY08512 | ProteinID:CDY08512.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00000286001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EF2A7E | SEG:seg | : |
Description
BnaA05g27480DBnaA05g27480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5Z3]
Coordinates
chrLK031986:+:508297..510724
Molecular Weight (calculated)
28042.3 Da
IEP (calculated)
8.134
GRAVY (calculated)
-0.770
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD KGVLLSFEDE SGKSWKFRYS YWNSSQSYVL TKGWSRYVKD
101: KHLNAGDVVL FQRHRFDIHR LFIGWRRRGE ASSSSAVSQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV AETPTVAAGS SKTVRLFGVN
201: LECHSDVVEP PPCPDAYNGQ HFYYYSTPHP MNISFAGEAM EQVGDGRG
101: KHLNAGDVVL FQRHRFDIHR LFIGWRRRGE ASSSSAVSQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV AETPTVAAGS SKTVRLFGVN
201: LECHSDVVEP PPCPDAYNGQ HFYYYSTPHP MNISFAGEAM EQVGDGRG
001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM NISFAGEALE QVGDGRG
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM NISFAGEALE QVGDGRG
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.