Factsheet for Bra034828.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08512	Canola	nucleus	95.35	99.19
Bra001411.1-P	Field mustard	nucleus	75.58	82.63
Bra041023.1-P	Field mustard	nucleus	81.4	79.55
Bra005886.1-P	Field mustard	nucleus	56.98	55.06
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	78.68	54.72
Bra017262.1-P	Field mustard	nucleus	51.16	53.88
Bra005301.1-P	Field mustard	nucleus	51.16	53.23
Bra009171.1-P	Field mustard	nucleus	48.45	52.3
GSMUA_Achr9P02600_001	Banana	nucleus	34.88	46.63
GSMUA_Achr3P19210_001	Banana	nucleus	35.66	45.77
TraesCS5B01G126200.1	Wheat	nucleus	43.41	42.26
GSMUA_Achr6P13140_001	Banana	nucleus	40.31	42.11
TraesCS5D01G134700.1	Wheat	nucleus	43.41	42.11
TraesCS5A01G127100.1	Wheat	nucleus	42.64	41.35
GSMUA_Achr6P35600_001	Banana	nucleus	38.76	41.32
TraesCS4A01G198300.2	Wheat	nucleus	43.8	40.5
TraesCS2B01G482400.1	Wheat	nucleus	41.86	40.45
KXG27771	Sorghum	nucleus	42.64	40.15
TraesCS2A01G460700.1	Wheat	nucleus	41.09	39.85
TraesCS4B01G117100.1	Wheat	nucleus	43.02	39.78
TraesCS4D01G114900.1	Wheat	nucleus	43.41	39.72
VIT_08s0007g02810.t01	Wine grape	nucleus	43.8	39.65
TraesCS2D01G460900.1	Wheat	nucleus	40.7	39.33
GSMUA_Achr11P...	Banana	nucleus	27.91	38.92
HORVU4Hr1G021650.22	Barley	nucleus	41.47	38.35
KRH67965	Soybean	nucleus	42.25	37.85
GSMUA_Achr9P08980_001	Banana	nucleus	23.64	37.65
Os11t0156000-01	Rice	nucleus	40.7	37.63
Zm00001d023446_P001	Maize	nucleus	41.09	37.46
Solyc09g010230.1.1	Tomato	nucleus	48.45	36.23
HORVU5Hr1G040620.4	Barley	nucleus	38.37	36.13
KRG96220	Soybean	nucleus	41.86	36.12
Zm00001d052591_P001	Maize	nucleus	42.25	35.5
KRH32791	Soybean	nucleus	46.12	35.31
KRH72242	Soybean	nucleus	46.9	35.17
PGSC0003DMT400023077	Potato	nucleus	45.35	34.93
KXG22988	Sorghum	plastid	43.02	34.69
Bra040478.1-P	Field mustard	nucleus	36.43	32.08
Bra007646.1-P	Field mustard	nucleus	35.27	31.16
Bra003482.1-P	Field mustard	nucleus	34.11	30.77
Bra004501.1-P	Field mustard	nucleus	35.27	30.64
Bra000434.1-P	Field mustard	nucleus	36.05	30.0
Os12t0157000-01	Rice	cytosol, nucleus	22.87	28.1
Bra014415.1-P	Field mustard	nucleus	34.5	27.81
Bra030497.1-P	Field mustard	nucleus	34.11	24.86
Bra026917.1-P	Field mustard	nucleus	32.56	24.71
Bra019821.1-P	Field mustard	nucleus	32.56	24.63
Bra038346.1-P	Field mustard	nucleus, plastid	33.33	24.57
Bra033294.1-P	Field mustard	nucleus	32.56	24.42
Bra037417.1-P	Field mustard	nucleus	29.07	24.19
Bra008552.1-P	Field mustard	nucleus	31.4	23.96
GSMUA_Achr6P18320_001	Banana	nucleus	31.01	23.53
Bra011002.1-P	Field mustard	nucleus	32.56	23.4
Bra026509.1-P	Field mustard	nucleus	29.07	23.01
Bra024735.1-P	Field mustard	nucleus	32.17	22.31
Bra030458.1-P	Field mustard	nucleus	23.26	18.99
Bra030476.1-P	Field mustard	nucleus	23.26	18.46
Bra018868.1-P	Field mustard	nucleus	23.64	18.05
Bra014282.1-P	Field mustard	nucleus	23.26	17.7
Bra018894.1-P	Field mustard	nucleus	22.48	17.16
Bra018854.1-P	Field mustard	nucleus	22.09	16.76
Bra018869.1-P	Field mustard	nucleus	21.32	16.47

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra034828	EnsemblPlants:Bra034828.1	EnsemblPlants:Bra034828.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4F182	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002547631	SEG:seg	:	:	:

Description

AT3G11580 (E=1e-110) | DNA-binding protein, putative

Coordinates

chrA05:+:21616173..21618367

Molecular Weight (calculated)

28939.4 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.714

Length

258 amino acids

Sequence
(BLAST)

001: MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGGD VTAESTEKGV LLSFEDESGK SWKFRYSYWN SSQSYVLTKG
101: WSRYVKDKHL NAGDVVLFQR HRFDIHRLFI GWRRRGEASS SSAVSAVTQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV AETPTVAAGS
201: SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HIYYYSTPHP MNISFAGEAM EQVGDGRG

Best Arabidopsis Sequence Match ( AT3G11580.1 )
(BLAST)

001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM NISFAGEALE QVGDGRG

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.