Factsheet for Bra005886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47260	Canola	nucleus	100.0	100.0
Bra009171.1-P	Field mustard	nucleus	65.92	73.64
CDX80996	Canola	nucleus	71.91	69.82
Bra001411.1-P	Field mustard	nucleus	54.68	61.86
Bra034828.1-P	Field mustard	nucleus	55.06	56.98
Bra041023.1-P	Field mustard	nucleus	55.43	56.06
Bra017262.1-P	Field mustard	nucleus	46.82	51.02
Bra005301.1-P	Field mustard	nucleus	46.07	49.6
GSMUA_Achr3P19210_001	Banana	nucleus	32.96	43.78
GSMUA_Achr9P02600_001	Banana	nucleus	31.09	43.01
GSMUA_Achr6P13140_001	Banana	nucleus	38.58	41.7
GSMUA_Achr6P35600_001	Banana	nucleus	37.45	41.32
TraesCS5B01G126200.1	Wheat	nucleus	40.45	40.75
TraesCS5D01G134700.1	Wheat	nucleus	40.45	40.6
TraesCS5A01G127100.1	Wheat	nucleus	40.07	40.23
VIT_08s0007g02810.t01	Wine grape	nucleus	42.7	40.0
TraesCS2A01G460700.1	Wheat	nucleus	39.7	39.85
TraesCS2B01G482400.1	Wheat	nucleus	39.7	39.7
KXG27771	Sorghum	nucleus	40.07	39.05
TraesCS2D01G460900.1	Wheat	nucleus	38.95	38.95
KRH67965	Soybean	nucleus	41.95	38.89
GSMUA_Achr11P...	Banana	nucleus	26.22	37.84
TraesCS4A01G198300.2	Wheat	nucleus	38.95	37.28
Zm00001d023446_P001	Maize	nucleus	39.33	37.1
TraesCS4B01G117100.1	Wheat	nucleus	38.58	36.92
TraesCS4D01G114900.1	Wheat	nucleus	38.95	36.88
Os11t0156000-01	Rice	nucleus	38.2	36.56
KRG96220	Soybean	nucleus	40.82	36.45
GSMUA_Achr9P08980_001	Banana	nucleus	22.1	36.42
KRH32791	Soybean	nucleus	45.69	36.2
HORVU4Hr1G021650.22	Barley	nucleus	37.45	35.84
HORVU5Hr1G040620.4	Barley	nucleus	36.7	35.77
KRH72242	Soybean	nucleus	46.07	35.76
Solyc09g010230.1.1	Tomato	nucleus	44.19	34.2
PGSC0003DMT400023077	Potato	nucleus	42.7	34.03
Zm00001d052591_P001	Maize	nucleus	38.95	33.88
KXG22988	Sorghum	plastid	38.2	31.88
Bra040478.1-P	Field mustard	nucleus	34.46	31.4
Bra004501.1-P	Field mustard	nucleus	33.71	30.3
Bra000434.1-P	Field mustard	nucleus	34.83	30.0
Bra007646.1-P	Field mustard	nucleus	32.21	29.45
Bra003482.1-P	Field mustard	nucleus	31.46	29.37
Bra014415.1-P	Field mustard	nucleus	31.84	26.56
Bra030497.1-P	Field mustard	nucleus	33.71	25.42
Bra033294.1-P	Field mustard	nucleus	32.58	25.29
Bra026917.1-P	Field mustard	nucleus	31.46	24.71
Bra019821.1-P	Field mustard	nucleus	31.46	24.63
Os12t0157000-01	Rice	cytosol, nucleus	19.1	24.29
Bra038346.1-P	Field mustard	nucleus, plastid	31.46	24.0
Bra026509.1-P	Field mustard	nucleus	28.84	23.62
Bra037417.1-P	Field mustard	nucleus	27.34	23.55
Bra011002.1-P	Field mustard	nucleus	31.09	23.12
Bra008552.1-P	Field mustard	nucleus	29.21	23.08
Bra024735.1-P	Field mustard	nucleus	30.71	22.04
GSMUA_Achr6P18320_001	Banana	nucleus	26.59	20.88
Bra030458.1-P	Field mustard	nucleus	22.1	18.67
Bra030476.1-P	Field mustard	nucleus	22.1	18.15
Bra018868.1-P	Field mustard	nucleus	21.72	17.16
Bra014282.1-P	Field mustard	nucleus	21.72	17.11
Bra018854.1-P	Field mustard	nucleus	20.97	16.47
Bra018894.1-P	Field mustard	nucleus	20.6	16.27
Bra018869.1-P	Field mustard	nucleus	19.85	15.87

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra005886	EnsemblPlants:Bra005886.1	EnsemblPlants:Bra005886.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CNU8	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000253F5E4	SEG:seg	:	:	:

Description

AT5G06250 (E=3e-093) | transcription factor

Coordinates

chrA03:-:1065437..1066699

Molecular Weight (calculated)

30350.6 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.817

Length

267 amino acids

Sequence
(BLAST)

001: MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK
101: CWRFRYSYWN SSQSYVLTKG WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY SNRPAHSEYS HYGAAVATAT
201: ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA AAAECPRQDS YYDQNMYNYY TPHSSAS

Best Arabidopsis Sequence Match ( AT5G06250.2 )
(BLAST)

001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMVILT LL

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.