Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P19210_001 | Banana | nucleus | 69.95 | 67.16 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 59.59 | 47.52 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 55.96 | 43.72 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 59.59 | 43.4 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 59.59 | 43.23 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 59.59 | 43.07 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 59.07 | 42.86 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 58.55 | 42.48 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 58.55 | 42.32 |
| KXG27771 | Sorghum | nucleus | 57.51 | 40.51 |
| Os11t0156000-01 | Rice | nucleus | 58.55 | 40.5 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 56.99 | 39.43 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 56.99 | 39.43 |
| Zm00001d023446_P001 | Maize | nucleus | 56.99 | 38.87 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 56.48 | 38.65 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 53.89 | 37.96 |
| GSMUA_Achr11P... | Banana | nucleus | 36.27 | 37.84 |
| CDX73868 | Canola | nucleus | 45.6 | 37.29 |
| Bra001411.1-P | Field mustard | nucleus | 45.6 | 37.29 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 53.89 | 37.28 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 31.09 | 37.04 |
| AT2G36080.1 | Thale cress | nucleus | 46.63 | 36.89 |
| KXG22988 | Sorghum | plastid | 61.14 | 36.88 |
| CDY62470 | Canola | nucleus | 43.52 | 36.84 |
| CDX84162 | Canola | nucleus | 46.11 | 36.63 |
| CDY43751 | Canola | nucleus | 46.11 | 36.63 |
| Bra017262.1-P | Field mustard | nucleus | 46.11 | 36.33 |
| CDX75073 | Canola | nucleus | 46.11 | 35.89 |
| CDY08512 | Canola | nucleus | 46.11 | 35.89 |
| Bra005301.1-P | Field mustard | nucleus | 46.11 | 35.89 |
| Zm00001d052591_P001 | Maize | nucleus | 56.48 | 35.5 |
| Bra034828.1-P | Field mustard | nucleus | 46.63 | 34.88 |
| CDY01036 | Canola | nucleus | 46.11 | 34.63 |
| Bra041023.1-P | Field mustard | nucleus | 46.11 | 33.71 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 48.7 | 32.98 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 41.45 | 32.0 |
| KRG96220 | Soybean | nucleus | 49.22 | 31.77 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 40.93 | 31.73 |
| AT5G06250.4 | Thale cress | nucleus | 46.11 | 31.34 |
| Bra005886.1-P | Field mustard | nucleus | 43.01 | 31.09 |
| CDY47260 | Canola | nucleus | 43.01 | 31.09 |
| KRH67965 | Soybean | nucleus | 46.11 | 30.9 |
| PGSC0003DMT400072354 | Potato | nucleus | 46.11 | 30.9 |
| KRH32791 | Soybean | nucleus | 52.85 | 30.27 |
| Solyc10g083210.1.1 | Tomato | nucleus | 46.63 | 29.22 |
| KRH72242 | Soybean | nucleus | 51.81 | 29.07 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 30.57 | 28.64 |
| CDX80996 | Canola | nucleus | 40.41 | 28.36 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 30.57 | 27.96 |
| PGSC0003DMT400023077 | Potato | nucleus | 46.63 | 26.87 |
| Solyc09g010230.1.1 | Tomato | nucleus | 47.15 | 26.38 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 39.9 | 26.19 |
| GSMUA_Achr1P05400_001 | Banana | nucleus | 40.41 | 26.17 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 31.61 | 25.96 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 44.04 | 25.76 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 41.97 | 25.63 |
| GSMUA_Achr5P09950_001 | Banana | nucleus | 42.49 | 25.47 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 29.53 | 25.45 |
| GSMUA_Achr2P22560_001 | Banana | nucleus | 39.9 | 24.84 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 47.67 | 24.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.57 | 24.48 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 26.42 | 24.29 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 41.97 | 24.04 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 41.45 | 23.53 |
| Bra009171.1-P | Field mustard | nucleus | 29.02 | 23.43 |
| CDX98911 | Canola | nucleus | 29.02 | 23.43 |
| CDY70080 | Canola | nucleus | 29.02 | 23.43 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 31.09 | 22.06 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 32.64 | 22.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.97 | 21.66 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 33.16 | 21.05 |
| GSMUA_Achr6P09880_001 | Banana | nucleus | 31.09 | 20.76 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 30.57 | 20.49 |
| GSMUA_Achr4P06710_001 | Banana | nucleus | 35.23 | 19.43 |
| GSMUA_Achr3P29380_001 | Banana | nucleus | 26.42 | 19.39 |
| GSMUA_Achr3P21100_001 | Banana | nucleus | 40.93 | 19.17 |
| GSMUA_Achr4P03670_001 | Banana | nucleus | 28.5 | 18.71 |
| GSMUA_Achr10P... | Banana | nucleus | 26.94 | 17.81 |
| GSMUA_Achr9P21470_001 | Banana | nucleus | 28.5 | 17.74 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 34.72 | 16.18 |
| GSMUA_Achr11P... | Banana | nucleus | 25.91 | 14.88 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G02600_001 | EnsemblPlants:GSMUA_Achr9P02600_001 | EnsemblPlants:GSMUA_Achr9T02600_001 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M0TWW7 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF2 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI0002967934 | SEG:seg | : | : | : |
Description
Conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G02600_001]
Coordinates
chr9:-:1857083..1857880
Molecular Weight (calculated)
22692.5 Da
IEP (calculated)
7.097
GRAVY (calculated)
-0.994
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQHHPQPWY SWEPHMSLHH HHYQHLYRAE QEEARYEREH MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGDSGDKGLL LSFEDESGKT WQFRYSYWTS
101: SQSYVLTKGW SRFVKEKRLD AGDVVLFERP RLGGDLKMTR DSKLSQPAGD QRNEAIQSET EAPTTSKRLR LFGVDLDYQP EPRPDPMTSI SWF
101: SQSYVLTKGW SRFVKEKRLD AGDVVLFERP RLGGDLKMTR DSKLSQPAGD QRNEAIQSET EAPTTSKRLR LFGVDLDYQP EPRPDPMTSI SWF
001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.