CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32791	Soybean	nucleus	86.34	88.13
KRH67965	Soybean	nucleus	51.16	61.11
KRG96220	Soybean	nucleus	51.45	59.2
VIT_08s0007g02810.t01	Wine grape	nucleus	45.35	54.74
CDX84162	Canola	nucleus	36.63	51.85
GSMUA_Achr9P02600_001	Banana	nucleus	29.07	51.81
AT2G36080.1	Thale cress	nucleus	36.63	51.64
CDX75073	Canola	nucleus	36.63	50.81
Bra005301.1-P	Field mustard	nucleus	36.34	50.4
CDY43751	Canola	nucleus	35.47	50.21
Bra017262.1-P	Field mustard	nucleus	35.76	50.2
CDX73868	Canola	nucleus	34.3	50.0
Bra001411.1-P	Field mustard	nucleus	34.3	50.0
GSMUA_Achr3P19210_001	Banana	nucleus	29.07	49.75
CDY08512	Canola	nucleus	34.88	48.39
GSMUA_Achr6P35600_001	Banana	nucleus	33.43	47.52
CDY01036	Canola	nucleus	35.47	47.47
CDY62470	Canola	nucleus	31.1	46.93
Bra034828.1-P	Field mustard	nucleus	35.17	46.9
TraesCS5B01G126200.1	Wheat	nucleus	35.76	46.42
TraesCS5A01G127100.1	Wheat	nucleus	35.76	46.24
Bra005886.1-P	Field mustard	nucleus	35.76	46.07
CDY47260	Canola	nucleus	35.76	46.07
TraesCS5D01G134700.1	Wheat	nucleus	35.47	45.86
KXG27771	Sorghum	nucleus	36.34	45.62
Bra041023.1-P	Field mustard	nucleus	34.88	45.45
GSMUA_Achr6P13140_001	Banana	nucleus	32.27	44.94
TraesCS2A01G460700.1	Wheat	nucleus	34.59	44.74
AT5G06250.4	Thale cress	nucleus	36.92	44.72
TraesCS2B01G482400.1	Wheat	nucleus	34.59	44.57
TraesCS2D01G460900.1	Wheat	nucleus	34.3	44.19
GSMUA_Achr9P08980_001	Banana	nucleus	20.64	43.83
Os11t0156000-01	Rice	nucleus	35.47	43.73
TraesCS4A01G198300.2	Wheat	nucleus	35.47	43.73
TraesCS4B01G117100.1	Wheat	nucleus	35.17	43.37
TraesCS4D01G114900.1	Wheat	nucleus	35.47	43.26
Solyc09g010230.1.1	Tomato	nucleus	42.15	42.03
Zm00001d023446_P001	Maize	nucleus	34.3	41.7
HORVU4Hr1G021650.22	Barley	nucleus	33.14	40.86
CDX80996	Canola	nucleus	32.56	40.73
PGSC0003DMT400023077	Potato	nucleus	39.53	40.6
Zm00001d052591_P001	Maize	nucleus	35.17	39.41
HORVU5Hr1G040620.4	Barley	nucleus	31.1	39.05
GSMUA_Achr11P...	Banana	nucleus	20.64	38.38
KXG22988	Sorghum	plastid	34.88	37.5
CDX98911	Canola	nucleus	24.71	35.56
CDY70080	Canola	nucleus	24.71	35.56
Bra009171.1-P	Field mustard	nucleus	24.42	35.15
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	36.63	33.96
Os12t0157000-01	Rice	cytosol, nucleus	20.35	33.33
KRG97268	Soybean	nucleus	32.56	27.12
KRH68988	Soybean	nucleus	31.4	25.71
GSMUA_Achr6P18320_001	Banana	nucleus	25.29	25.59
KRH34761	Soybean	nucleus	25.58	25.07
KRG92025	Soybean	nucleus	24.71	23.48
KRH75484	Soybean	nucleus	25.87	23.18
KRH70603	Soybean	nucleus	25.87	22.19
KRH47753	Soybean	nucleus	31.4	21.6
KRG93082	Soybean	nucleus	18.6	20.06
KRH06334	Soybean	nucleus	32.27	19.07

Protein Annotations

EntrezGene:100818164	MapMan:15.5.5.3	Gene3D:2.40.330.10	EMBL:ACUP02001196	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlantsGene:GLYMA_02G200500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JGL1	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH72242	ProteinID:KRH72242	ProteinID:KRH72242.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00023371FD	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:38400034..38402766

Molecular Weight (calculated)

39081.7 Da

IEP (calculated)

6.890

GRAVY (calculated)

-1.105

Length

344 amino acids

Sequence
(BLAST)

001: MSTNHYTMDL PEPTLWWPHP HQQQLTLIDP DPLPLNLNND DNDNGDDNDN DENQTVTTTT TGGEEEIINN KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY
101: FPLSGGDSGS SECKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKDKRLDAGD VVLFQRHRAD AQRLFIGWRR RRQSDALPPP AHVSSRKSGG
201: DGNSSKNEGD VGVGWTRGFY PAHHPYPTHH HHPSPYHHQQ DDSLHAVRGS QGQNQRTRPV GNSSSSSSSS SRVLRLFGVN MECQPEHDDS GPSTPQCSYN
301: TNNILPSTQG TDIHSHLNFY QQQQTSNSKP PPHHMMIRHQ PYYY

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.