CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75484	Soybean	nucleus	87.78	91.67
KRH34761	Soybean	nucleus	66.33	75.78
KRG92025	Soybean	nucleus	67.08	74.31
CDX97996	Canola	nucleus	53.62	66.15
CDY61361	Canola	nucleus	53.62	65.75
CDY72302	Canola	nucleus	53.12	65.34
CDY24391	Canola	nucleus	54.61	64.79
CDY58354	Canola	nucleus	52.62	64.72
GSMUA_Achr5P09950_001	Banana	nucleus	51.62	64.29
CDX84999	Canola	nucleus	56.61	64.12
CDY36099	Canola	nucleus	55.61	63.71
CDY16133	Canola	nucleus	56.86	63.69
Bra019821.1-P	Field mustard	nucleus	54.11	63.64
Bra026917.1-P	Field mustard	nucleus	53.87	63.53
AT1G25560.1	Thale cress	nucleus	57.11	63.43
AT1G13260.1	Thale cress	nucleus	54.36	63.37
AT1G68840.1	Thale cress	nucleus	55.61	63.35
PGSC0003DMT400002125	Potato	nucleus	62.84	63.32
Solyc05g009790.1.1	Tomato	nucleus	62.34	63.29
CDY40973	Canola	nucleus	49.13	62.54
Bra011002.1-P	Field mustard	nucleus	55.61	62.12
CDX81561	Canola	nucleus	52.87	61.81
Bra024735.1-P	Field mustard	nucleus	57.11	61.56
GSMUA_Achr1P05400_001	Banana	nucleus	45.14	60.74
CDY45849	Canola	nucleus, plastid	52.62	60.29
Bra038346.1-P	Field mustard	nucleus, plastid	52.62	60.29
AT3G25730.1	Thale cress	nucleus	49.88	60.06
Bra026509.1-P	Field mustard	nucleus	48.63	59.82
CDX99755	Canola	nucleus	50.37	59.41
GSMUA_Achr3P29380_001	Banana	nucleus	38.65	58.94
GSMUA_Achr4P03670_001	Banana	nucleus	42.89	58.5
GSMUA_Achr10P...	Banana	nucleus	41.9	57.53
CDX83547	Canola	nucleus	46.38	57.41
GSMUA_Achr2P22560_001	Banana	nucleus	42.39	54.84
GSMUA_Achr4P06710_001	Banana	nucleus	47.63	54.57
HORVU4Hr1G074300.4	Barley	nucleus	20.2	54.0
GSMUA_Achr6P09880_001	Banana	nucleus	38.9	53.98
TraesCS3D01G260100.1	Wheat	nucleus	49.88	53.48
TraesCS3A01G259900.1	Wheat	nucleus	49.63	53.07
Os05t0549800-01	Rice	nucleus	45.14	52.77
TraesCS1A01G372300.1	Wheat	nucleus	51.37	52.55
TraesCS1D01G378900.1	Wheat	nucleus	51.37	52.55
TraesCS3B01G293000.1	Wheat	nucleus	50.12	52.48
Os01t0693400-01	Rice	nucleus	51.37	52.42
Zm00001d043782_P001	Maize	nucleus	50.62	52.19
TraesCS1B01G392300.1	Wheat	nucleus	50.87	52.17
HORVU3Hr1G064640.4	Barley	nucleus	49.13	51.84
Zm00001d009468_P001	Maize	nucleus, plastid	48.38	51.73
HORVU1Hr1G082670.6	Barley	nucleus	50.62	51.65
HORVU3Hr1G064590.1	Barley	nucleus	24.94	51.55
GSMUA_AchrUn_...	Banana	nucleus	47.63	51.07
KXG22484	Sorghum	nucleus, plastid	51.37	50.49
Zm00001d038907_P001	Maize	nucleus, plastid	50.62	50.0
GSMUA_Achr9P21470_001	Banana	nucleus	38.65	50.0
TraesCS1B01G392000.1	Wheat	nucleus	50.87	49.63
EES03472	Sorghum	nucleus, plastid	50.87	49.39
Zm00001d011639_P001	Maize	nucleus	49.88	49.38
TraesCS1D01G378400.1	Wheat	nucleus	50.12	48.79
TraesCS1A01G372200.1	Wheat	nucleus	50.12	48.67
TraesCS1B01G392200.1	Wheat	nucleus, plastid	49.88	48.08
TraesCS1D01G378800.1	Wheat	nucleus	49.38	47.71
TraesCS1D01G378500.1	Wheat	nucleus	49.63	47.49
TraesCS1A01G372100.1	Wheat	nucleus	49.38	44.8
GSMUA_Achr3P21100_001	Banana	nucleus	44.89	43.69
KRG93082	Soybean	nucleus	25.44	31.97
KRH67965	Soybean	nucleus	22.69	31.6
KRG96220	Soybean	nucleus	22.19	29.77
KRH32791	Soybean	nucleus	22.44	26.71
KRH72242	Soybean	nucleus	22.19	25.87
KRH68988	Soybean	nucleus	24.94	23.81
KRG97268	Soybean	nucleus	24.44	23.73
KRH47753	Soybean	nucleus	25.44	20.4
KRH06334	Soybean	nucleus	27.93	19.24

Protein Annotations

EntrezGene:100801107	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EMBL:ACUP02000784
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_02G099500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JDW7	InterPro:IPR001471
InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	EnsemblPlants:KRH70603	ProteinID:KRH70603	ProteinID:KRH70603.1
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI000059867A	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:9306726..9308948

Molecular Weight (calculated)

43612.5 Da

IEP (calculated)

9.459

GRAVY (calculated)

-0.490

Length

401 amino acids

Sequence
(BLAST)

001: MDAISCMDES TTTESLSISL SPTSSSEKAK PSSMITSSEK VSLSPPPSNR LCRVGSGASA VVDPDGGGSG AEVESRKLPS SKYKGVVPQP NGRWGAQIYE
101: KHQRVWLGTF NEEDEAARAY DIAAQRFRGK DAVTNFKPLA GADDDDGESE FLNSHSKPEI VDMLRKHTYN DELEQSKRSR GVVRRRGSAA AGTANSISGA
201: CFTKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS SNGVSATTIA AVTATPTAAK GVLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK
301: NLKAGDTVCF HRSTGPDKQL YIDWKTRNVV NNEVALFGPV GPVVEPIQMV RLFGVNILKL PGSDTIVGNN NNASGCCNGK RREMELFSLE CSKKPKIIGA
401: L

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.