Factsheet for TraesCS1D01G378800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G372200.1	Wheat	nucleus	92.29	92.74
TraesCS1D01G378400.1	Wheat	nucleus	91.81	92.48
TraesCS1B01G392200.1	Wheat	nucleus, plastid	91.57	91.35
TraesCS1D01G378900.1	Wheat	nucleus	82.41	87.24
TraesCS1D01G378500.1	Wheat	nucleus	86.02	85.2
HORVU1Hr1G082670.6	Barley	nucleus	79.52	83.97
KXG22484	Sorghum	nucleus, plastid	69.4	70.59
Zm00001d009468_P001	Maize	nucleus, plastid	63.13	69.87
Os05t0549800-01	Rice	nucleus	57.35	69.39
TraesCS3D01G260100.1	Wheat	nucleus	61.2	67.91
GSMUA_Achr1P21250_001	Banana	nucleus	41.93	59.18
CDX97996	Canola	nucleus	43.61	55.69
CDY72302	Canola	nucleus	43.61	55.52
CDY58354	Canola	nucleus	43.37	55.21
CDY61361	Canola	nucleus	43.37	55.05
KRH34761	Soybean	nucleus	46.51	54.99
CDY40973	Canola	nucleus	41.69	54.92
AT1G68840.1	Thale cress	nucleus	45.78	53.98
CDY24391	Canola	nucleus	43.61	53.55
CDX84999	Canola	nucleus	45.54	53.39
CDX81561	Canola	nucleus	44.1	53.35
HORVU4Hr1G074300.4	Barley	nucleus	19.28	53.33
KRG92025	Soybean	nucleus	46.51	53.31
Bra026917.1-P	Field mustard	nucleus	43.61	53.24
AT1G13260.1	Thale cress	nucleus	44.1	53.2
CDY36099	Canola	nucleus	44.82	53.14
Bra019821.1-P	Field mustard	nucleus	43.61	53.08
CDY45849	Canola	nucleus, plastid	44.34	52.57
Bra038346.1-P	Field mustard	nucleus, plastid	44.34	52.57
AT3G25730.1	Thale cress	nucleus	42.17	52.55
CDY16133	Canola	nucleus	45.3	52.51
Bra026509.1-P	Field mustard	nucleus	40.96	52.15
TraesCS4D01G322500.1	Wheat	nucleus	38.31	52.13
Bra011002.1-P	Field mustard	nucleus	44.82	51.81
GSMUA_Achr6P01420_001	Banana	nucleus	39.28	51.58
AT1G25560.1	Thale cress	nucleus	44.58	51.25
CDX99755	Canola	nucleus	41.93	51.18
VIT_01s0011g03070.t01	Wine grape	nucleus	46.51	51.06
Bra024735.1-P	Field mustard	nucleus	45.3	50.54
KRH75484	Soybean	nucleus	46.02	49.74
CDX83547	Canola	nucleus	38.55	49.38
KRH70603	Soybean	nucleus	47.71	49.38
TraesCS3D01G052300.1	Wheat	nucleus	42.17	49.16
TraesCS3D01G052400.1	Wheat	nucleus	41.45	48.73
Solyc05g009790.1.1	Tomato	nucleus	46.27	48.61
PGSC0003DMT400002125	Potato	nucleus	46.51	48.49
TraesCS4D01G322600.1	Wheat	nucleus	40.0	45.86
TraesCS7D01G448900.1	Wheat	nucleus	18.8	39.8
TraesCS7D01G017000.1	Wheat	nucleus	19.76	37.79
TraesCS5D01G134700.1	Wheat	nucleus	22.89	35.71
TraesCS2D01G460900.1	Wheat	nucleus	22.17	34.46
TraesCS4D01G114900.1	Wheat	nucleus	22.65	33.33
TraesCS1D01G203900.1	Wheat	nucleus	22.17	31.62
TraesCS2D01G392400.1	Wheat	nucleus	25.78	26.16
TraesCS6D01G240600.1	Wheat	nucleus	26.02	26.09

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1D01G378800	EnsemblPlants:TraesCS1D01G378800.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:454769103..454770350

Molecular Weight (calculated)

44543.2 Da

IEP (calculated)

10.115

GRAVY (calculated)

-0.460

Length

415 amino acids

Sequence
(BLAST)

001: MDSARSCLVD DVSSGASTGK KASPAPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRGG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDTAAQR FRGRDAVTNF RPLAESEPED AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFFASAS SSPTSSSSAP ASSAPSAAAP SAATRREHLF
201: DKTATPSDVG KLNRLVIPKQ HAEKHFPLQL PSSSAAVPGE CKGVLLNFDD AVGKTWRFRY SYWNSSQSYV LTMGWSRFVK EKGLHAGDAV GFYRSASGNN
301: QLFIDCKLRS KTTTTTTTFL NAVAAPSAAP VTRTVRLFGV DLPTAPAPER EEYGMTKTNK KSMDASVAAP TPVHAVWKKR CVDFALTYRH ATTSQCPRSR
401: DQLEGVQGAG STFAL

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.