Factsheet for GSMUA_Achr1P21250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22560_001	Banana	nucleus	59.86	56.77
GSMUA_Achr1P05400_001	Banana	nucleus	57.48	56.71
GSMUA_Achr5P09950_001	Banana	nucleus	60.2	54.97
GSMUA_Achr10P...	Banana	nucleus	53.74	54.11
GSMUA_Achr6P09880_001	Banana	nucleus	52.72	53.63
GSMUA_Achr6P01420_001	Banana	nucleus	53.74	50.0
GSMUA_Achr3P29380_001	Banana	nucleus	43.54	48.67
HORVU4Hr1G074300.4	Barley	nucleus	24.83	48.67
HORVU3Hr1G064590.1	Barley	nucleus	31.97	48.45
TraesCS3D01G260100.1	Wheat	nucleus	60.88	47.86
HORVU3Hr1G064640.4	Barley	nucleus	61.56	47.63
TraesCS3A01G259900.1	Wheat	nucleus	60.54	47.47
TraesCS3B01G293000.1	Wheat	nucleus	60.88	46.74
GSMUA_Achr4P03670_001	Banana	nucleus	46.6	46.6
GSMUA_AchrUn_...	Banana	nucleus	59.18	46.52
Zm00001d009468_P001	Maize	nucleus, plastid	58.5	45.87
Zm00001d043782_P001	Maize	nucleus	60.54	45.76
Os05t0549800-01	Rice	nucleus	53.06	45.48
Zm00001d038907_P001	Maize	nucleus, plastid	62.24	45.07
TraesCS1A01G372300.1	Wheat	nucleus	59.52	44.64
TraesCS1D01G378900.1	Wheat	nucleus	59.52	44.64
KXG22484	Sorghum	nucleus, plastid	61.9	44.61
GSMUA_Achr4P06710_001	Banana	nucleus	53.06	44.57
HORVU1Hr1G082670.6	Barley	nucleus	59.52	44.53
TraesCS1B01G392300.1	Wheat	nucleus	58.84	44.25
Zm00001d011639_P001	Maize	nucleus	60.88	44.2
Os01t0693400-01	Rice	nucleus	58.84	44.02
TraesCS1B01G392000.1	Wheat	nucleus	60.88	43.55
EES03472	Sorghum	nucleus, plastid	60.88	43.34
GSMUA_Achr9P21470_001	Banana	nucleus	45.24	42.9
TraesCS1A01G372200.1	Wheat	nucleus	59.86	42.62
TraesCS1D01G378500.1	Wheat	nucleus	60.2	42.24
TraesCS1D01G378400.1	Wheat	nucleus	59.18	42.23
TraesCS1D01G378800.1	Wheat	nucleus	59.18	41.93
TraesCS1B01G392200.1	Wheat	nucleus, plastid	58.84	41.59
GSMUA_Achr3P21100_001	Banana	nucleus	57.82	41.26
GSMUA_Achr9P02600_001	Banana	nucleus	26.19	39.9
TraesCS1A01G372100.1	Wheat	nucleus	59.18	39.37
GSMUA_Achr3P19210_001	Banana	nucleus	26.53	38.81
GSMUA_Achr4P26430_001	Banana	nucleus	30.61	36.0
GSMUA_Achr9P08980_001	Banana	nucleus	19.39	35.19
GSMUA_Achr4P30170_001	Banana	nucleus	29.59	34.94
GSMUA_Achr7P04630_001	Banana	nucleus	23.47	33.5
GSMUA_Achr6P35600_001	Banana	nucleus	27.21	33.06
GSMUA_Achr5P12850_001	Banana	nucleus	23.47	32.7
GSMUA_Achr6P13140_001	Banana	nucleus	26.53	31.58
GSMUA_Achr4P24970_001	Banana	nucleus	25.17	31.49
GSMUA_AchrUn_...	Banana	cytosol	25.51	31.12
GSMUA_Achr11P...	Banana	nucleus	19.05	30.27
GSMUA_Achr4P12210_001	Banana	nucleus	21.77	28.57
GSMUA_Achr1P03600_001	Banana	nucleus	31.97	28.48
GSMUA_Achr5P20340_001	Banana	nucleus	30.27	26.41
GSMUA_Achr5P10220_001	Banana	nucleus	24.15	26.1
GSMUA_Achr2P00400_001	Banana	nucleus	24.83	25.35
GSMUA_Achr9P18780_001	Banana	nucleus	24.15	24.83
GSMUA_Achr2P10230_001	Banana	nucleus	25.17	24.34
GSMUA_Achr8P14650_001	Banana	nucleus	32.31	22.95
GSMUA_Achr11P...	Banana	nucleus	25.85	22.62
GSMUA_Achr6P18320_001	Banana	nucleus	25.17	21.76

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G21250_001	EnsemblPlants:GSMUA_Achr1P21250_001	EnsemblPlants:GSMUA_Achr1T21250_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0S1T3	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI0002961F83	:	:	:	:

Description

AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21250_001]

Coordinates

chr1:-:16008853..16009842

Molecular Weight (calculated)

33060.2 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.608

Length

294 amino acids

Sequence
(BLAST)

001: MEWSCIEDAM SDGEKRPEVP SPVADPIRRM GSGVSVVFDP TPEVGIEAEA ESGRRLPSSR YKGVVPQPNG RWGAQIYERH QRVWLGTFGD EAEAARVYDV
101: AAQRFRGRDA HTYHDELQQS KRFHAAGHGM GFGRRRMPSY YGSVRELLFD KVVTPSDVGK LNRLVIPKQH AEKHFPLKAG TAAACEGVLL NFEDATGKMW
201: RFRYSYWNSS QSYVITKGWI RFVKEKSLKA GDTVSFWRSM GPEKHLFIDR KPRPENTSCT TKPVRPAHAF RLFGVTISEL PASGGIGKTA AEKE

Best Arabidopsis Sequence Match ( AT3G25730.1 )
(BLAST)

001: MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI
201: PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR
301: LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL

Arabidopsis Description

ARF14AP2/ERF and B3 domain-containing transcription factor ARF14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.