Factsheet for GSMUA_Achr4P06710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29380_001	Banana	nucleus	57.71	76.81
GSMUA_Achr4P03670_001	Banana	nucleus	55.14	65.65
GSMUA_Achr5P09950_001	Banana	nucleus	56.86	61.8
GSMUA_Achr9P21470_001	Banana	nucleus	50.86	57.42
GSMUA_Achr6P01420_001	Banana	nucleus	49.14	54.43
GSMUA_Achr1P21250_001	Banana	nucleus	44.57	53.06
GSMUA_Achr1P05400_001	Banana	nucleus	45.14	53.02
CDX97996	Canola	nucleus	49.14	52.92
CDY61361	Canola	nucleus	49.14	52.6
CDY72302	Canola	nucleus	48.57	52.15
CDY58354	Canola	nucleus	48.29	51.84
GSMUA_Achr10P...	Banana	nucleus	43.14	51.71
KRH34761	Soybean	nucleus	51.71	51.57
CDY24391	Canola	nucleus	49.43	51.18
AT1G68840.1	Thale cress	nucleus	50.86	50.57
GSMUA_Achr6P09880_001	Banana	nucleus	41.71	50.52
Bra019821.1-P	Field mustard	nucleus	49.14	50.44
CDY40973	Canola	nucleus	45.14	50.16
CDY36099	Canola	nucleus	50.0	50.0
GSMUA_Achr2P22560_001	Banana	nucleus	44.29	50.0
Bra026917.1-P	Field mustard	nucleus	48.57	50.0
AT1G13260.1	Thale cress	nucleus	49.14	50.0
KRG92025	Soybean	nucleus	51.43	49.72
CDX84999	Canola	nucleus	50.29	49.72
AT3G25730.1	Thale cress	nucleus	47.14	49.55
AT1G25560.1	Thale cress	nucleus	50.86	49.31
CDY16133	Canola	nucleus	50.29	49.16
CDX81561	Canola	nucleus	48.0	48.98
Bra011002.1-P	Field mustard	nucleus	50.0	48.75
VIT_01s0011g03070.t01	Wine grape	nucleus	52.57	48.68
KRH75484	Soybean	nucleus	52.86	48.18
CDX99755	Canola	nucleus	46.57	47.94
Bra026509.1-P	Field mustard	nucleus	44.57	47.85
Bra038346.1-P	Field mustard	nucleus, plastid	47.71	47.71
CDY45849	Canola	nucleus, plastid	47.71	47.71
KRH70603	Soybean	nucleus	54.57	47.63
Bra024735.1-P	Field mustard	nucleus	50.57	47.58
PGSC0003DMT400002125	Potato	nucleus	52.57	46.23
Solyc05g009790.1.1	Tomato	nucleus	52.0	46.08
GSMUA_AchrUn_...	Banana	nucleus	48.57	45.45
CDX83547	Canola	nucleus	41.71	45.06
GSMUA_Achr3P21100_001	Banana	nucleus	46.0	39.08
GSMUA_Achr9P02600_001	Banana	nucleus	19.43	35.23
GSMUA_Achr3P19210_001	Banana	nucleus	19.71	34.33
GSMUA_Achr4P30170_001	Banana	nucleus	22.57	31.73
GSMUA_Achr4P26430_001	Banana	nucleus	22.57	31.6
GSMUA_Achr9P08980_001	Banana	nucleus	14.57	31.48
GSMUA_Achr6P35600_001	Banana	nucleus	21.43	30.99
GSMUA_Achr6P13140_001	Banana	nucleus	20.57	29.15
GSMUA_Achr11P...	Banana	nucleus	14.86	28.11
GSMUA_Achr7P04630_001	Banana	nucleus	16.29	27.67
GSMUA_Achr5P12850_001	Banana	nucleus	16.0	26.54
GSMUA_Achr1P03600_001	Banana	nucleus	24.57	26.06
GSMUA_Achr4P24970_001	Banana	nucleus	17.14	25.53
GSMUA_Achr4P12210_001	Banana	nucleus	16.29	25.45
GSMUA_AchrUn_...	Banana	cytosol	17.43	25.31
GSMUA_Achr5P20340_001	Banana	nucleus	22.57	23.44
GSMUA_Achr2P10230_001	Banana	nucleus	19.43	22.37
GSMUA_Achr8P14650_001	Banana	nucleus	25.71	21.74
GSMUA_Achr9P18780_001	Banana	nucleus	17.43	21.33
GSMUA_Achr5P10220_001	Banana	nucleus	16.57	21.32
GSMUA_Achr11P...	Banana	nucleus	20.29	21.13
GSMUA_Achr2P00400_001	Banana	nucleus	17.14	20.83
GSMUA_Achr6P18320_001	Banana	nucleus	19.43	20.0

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G06710_001	EnsemblPlants:GSMUA_Achr4P06710_001	EnsemblPlants:GSMUA_Achr4T06710_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0SLN8	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000296517D	SEG:seg	:	:	:

Description

AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06710_001]

Coordinates

chr4:+:5028415..5029619

Molecular Weight (calculated)

38575.6 Da

IEP (calculated)

9.491

GRAVY (calculated)

-0.458

Length

350 amino acids

Sequence
(BLAST)

001: MRKTGPVPSP DPKSLQRVGS GASDVIDPEV GVEAESRKLP SSHYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEAEAACA YDVAVQRFRG RDAITNFKPL
101: NDADNGDAAE LSFLDSHSKA EITAPRSAPV TGLLVGAQRQ HLFDKAVTPS DVGKLNRLVI PKQHAEKHFP LQKTGAAAAA GKGVMLNFED AYGKVWRFRY
201: SYWNSSQSYV LTKGWSRFVK EKGLEAGDVI TFHRSTDPEK QLFIDSTARA GRGSAVAPTQ RPPVQVVRLF GFNIVRNPAA PVGGDGVDGN AASCETGKRN
301: RDHMKSISSQ RMIKRHCTEA FEENDSIRNF ISFFLYCSVL LIQSVHMDCL

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.