Factsheet for Bra026917.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72302	Canola	nucleus	95.59	99.69
CDY58354	Canola	nucleus	93.82	97.85
Bra019821.1-P	Field mustard	nucleus	90.0	89.74
AT1G13260.1	Thale cress	nucleus	89.12	88.08
Bra026509.1-P	Field mustard	nucleus	68.24	71.17
Bra038346.1-P	Field mustard	nucleus, plastid	63.24	61.43
Bra011002.1-P	Field mustard	nucleus	64.41	61.0
Bra024735.1-P	Field mustard	nucleus	66.18	60.48
GSMUA_Achr5P09950_001	Banana	nucleus	55.59	58.7
KRH34761	Soybean	nucleus	59.41	57.55
GSMUA_Achr1P05400_001	Banana	nucleus	50.0	57.05
VIT_01s0011g03070.t01	Wine grape	nucleus	63.24	56.88
GSMUA_Achr4P03670_001	Banana	nucleus	48.82	56.46
KRG92025	Soybean	nucleus	59.71	56.08
KRH75484	Soybean	nucleus	62.65	55.47
PGSC0003DMT400002125	Potato	nucleus	64.41	55.03
Solyc05g009790.1.1	Tomato	nucleus	63.82	54.94
GSMUA_Achr3P29380_001	Banana	nucleus	42.06	54.37
KRH70603	Soybean	nucleus	63.53	53.87
GSMUA_Achr10P...	Banana	nucleus	45.88	53.42
GSMUA_Achr2P22560_001	Banana	nucleus	47.65	52.26
GSMUA_Achr6P09880_001	Banana	nucleus	43.53	51.21
TraesCS3D01G260100.1	Wheat	nucleus	55.29	50.27
TraesCS3B01G293000.1	Wheat	nucleus	55.88	49.61
TraesCS3A01G259900.1	Wheat	nucleus	54.71	49.6
Os05t0549800-01	Rice	nucleus	50.0	49.56
Os01t0693400-01	Rice	nucleus	56.76	49.11
Zm00001d043782_P001	Maize	nucleus	56.18	49.1
Zm00001d009468_P001	Maize	nucleus, plastid	53.82	48.8
GSMUA_Achr9P21470_001	Banana	nucleus	44.41	48.71
HORVU4Hr1G074300.4	Barley	nucleus	21.47	48.67
GSMUA_Achr4P06710_001	Banana	nucleus	50.0	48.57
HORVU3Hr1G064590.1	Barley	nucleus	27.35	47.94
HORVU3Hr1G064640.4	Barley	nucleus	53.53	47.89
TraesCS1D01G378900.1	Wheat	nucleus	54.71	47.45
HORVU1Hr1G082670.6	Barley	nucleus	54.41	47.07
KXG22484	Sorghum	nucleus, plastid	56.47	47.06
Zm00001d038907_P001	Maize	nucleus, plastid	56.18	47.04
TraesCS1B01G392300.1	Wheat	nucleus	53.82	46.8
EES03472	Sorghum	nucleus, plastid	56.76	46.73
TraesCS1A01G372300.1	Wheat	nucleus	53.82	46.68
GSMUA_AchrUn_...	Banana	nucleus	50.59	45.99
Zm00001d011639_P001	Maize	nucleus	54.12	45.43
TraesCS1B01G392000.1	Wheat	nucleus	54.12	44.77
TraesCS1D01G378400.1	Wheat	nucleus	53.82	44.42
TraesCS1A01G372200.1	Wheat	nucleus	53.53	44.07
TraesCS1D01G378500.1	Wheat	nucleus	53.82	43.68
TraesCS1D01G378800.1	Wheat	nucleus	53.24	43.61
TraesCS1B01G392200.1	Wheat	nucleus, plastid	53.24	43.51
TraesCS1A01G372100.1	Wheat	nucleus	52.94	40.72
GSMUA_Achr3P21100_001	Banana	nucleus	47.94	39.56
Bra017262.1-P	Field mustard	nucleus	26.47	36.73
Bra001411.1-P	Field mustard	nucleus	24.41	35.17
Bra005301.1-P	Field mustard	nucleus	25.59	35.08
Bra034828.1-P	Field mustard	nucleus	24.71	32.56
Bra030458.1-P	Field mustard	nucleus	29.41	31.65
Bra005886.1-P	Field mustard	nucleus	24.71	31.46
Bra041023.1-P	Field mustard	nucleus	24.41	31.44
Bra030476.1-P	Field mustard	nucleus	30.0	31.38
Bra004501.1-P	Field mustard	nucleus	26.47	30.3
Bra018868.1-P	Field mustard	nucleus	29.41	29.59
Bra018854.1-P	Field mustard	nucleus	29.41	29.41
Bra040478.1-P	Field mustard	nucleus	25.29	29.35
Bra018894.1-P	Field mustard	nucleus	29.12	29.29
Bra014282.1-P	Field mustard	nucleus	29.12	29.2
Bra003482.1-P	Field mustard	nucleus	24.12	28.67
Bra018869.1-P	Field mustard	nucleus	27.94	28.44
Bra000434.1-P	Field mustard	nucleus	25.88	28.39
Bra007646.1-P	Field mustard	nucleus	23.82	27.74
Bra033294.1-P	Field mustard	nucleus	26.47	26.16
Bra030497.1-P	Field mustard	nucleus	27.06	25.99
Bra008552.1-P	Field mustard	nucleus	25.59	25.74
Bra014415.1-P	Field mustard	nucleus	24.12	25.62
Bra037417.1-P	Field mustard	nucleus	22.06	24.19
Bra009171.1-P	Field mustard	nucleus	16.18	23.01

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra026917	EnsemblPlants:Bra026917.1	EnsemblPlants:Bra026917.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4EDQ7	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI0002542F04	SEG:seg	:	:	:

Description

AT1G13260 (E=9e-162) RAV1 | RAV1; DNA binding / transcription factor/ transcription repressor

Coordinates

chrA09:-:34288298..34289320

Molecular Weight (calculated)

38065.5 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.622

Length

340 amino acids

Sequence
(BLAST)

001: MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA
101: VHRFRGRDAV TNFKDARLDD GEVEFLNTHS KSEIVDMLRK HTYSEELEQS KRRRNGSGNA VRSTTQNDGV STTEFRSAVS LFEKAVTPSD VGKLNRLVIP
201: KHHAEKYFPL PPSSNVSVKG VLLNFEDVAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVSFS RSDGQDQQLY IGWKSRSGSD VETGRVLRLF
301: GVNISPAGSR NDVVGNKRVV NDTEMLSLVC SKKQRIFHAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.