Factsheet for Bra030458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29620	Canola	nucleus	99.68	91.57
CDY35575	Canola	nucleus	95.89	87.83
Bra014282.1-P	Field mustard	nucleus	79.75	74.34
AT1G51120.1	Thale cress	nucleus	78.16	70.17
AT1G50680.1	Thale cress	nucleus	74.05	69.44
Bra018894.1-P	Field mustard	nucleus	74.05	69.23
Bra018854.1-P	Field mustard	nucleus	68.67	63.82
Bra018868.1-P	Field mustard	nucleus	68.04	63.61
Bra030476.1-P	Field mustard	nucleus	63.61	61.85
Bra018869.1-P	Field mustard	nucleus	63.29	59.88
PGSC0003DMT400085602	Potato	nucleus	18.99	46.88
KRG93082	Soybean	nucleus	46.52	46.08
VIT_11s0037g00010.t01	Wine grape	nucleus	47.47	42.02
Solyc03g083110.1.1	Tomato	nucleus	43.67	41.19
PGSC0003DMT400092316	Potato	nucleus	13.29	31.58
GSMUA_Achr11P...	Banana	nucleus	32.91	30.95
Bra026509.1-P	Field mustard	nucleus	31.33	30.37
GSMUA_Achr8P14650_001	Banana	nucleus	39.24	29.95
Solyc12g098460.1.1	Tomato	nucleus	19.62	29.67
Bra019821.1-P	Field mustard	nucleus	31.96	29.62
Bra026917.1-P	Field mustard	nucleus	31.65	29.41
Bra038346.1-P	Field mustard	nucleus, plastid	31.96	28.86
Bra011002.1-P	Field mustard	nucleus	31.96	28.13
Bra024735.1-P	Field mustard	nucleus	32.28	27.42
Bra001411.1-P	Field mustard	nucleus	18.67	25.0
Bra005301.1-P	Field mustard	nucleus	18.99	24.19
Bra017262.1-P	Field mustard	nucleus	18.67	24.08
Bra034828.1-P	Field mustard	nucleus	18.99	23.26
Zm00001d024354_P001	Maize	nucleus, plastid	19.94	22.11
Bra005886.1-P	Field mustard	nucleus	18.67	22.1
Bra041023.1-P	Field mustard	nucleus	18.35	21.97
EES14747	Sorghum	plastid	18.67	21.15
Os02t0455800-01	Rice	nucleus	16.46	19.48
Bra003482.1-P	Field mustard	nucleus	17.41	19.23
Bra007646.1-P	Field mustard	nucleus	17.72	19.18
Bra040478.1-P	Field mustard	nucleus	17.72	19.11
Bra004501.1-P	Field mustard	nucleus	17.72	18.86
PGSC0003DMT400040900	Potato	nucleus	8.86	18.3
KXG24821	Sorghum	nucleus	16.46	18.25
Bra000434.1-P	Field mustard	nucleus	17.72	18.06
Bra037417.1-P	Field mustard	nucleus	17.72	18.06
Bra008552.1-P	Field mustard	nucleus	18.99	17.75
Os02t0455900-00	Rice	nucleus	14.87	17.28
Bra033294.1-P	Field mustard	nucleus	18.67	17.15
Bra014415.1-P	Field mustard	nucleus	17.09	16.88
Bra009171.1-P	Field mustard	nucleus	12.66	16.74
Bra030497.1-P	Field mustard	nucleus	18.67	16.67

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra030458	EnsemblPlants:Bra030458.1	EnsemblPlants:Bra030458.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4ENT8	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF13	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI0002547ADB	SEG:seg	:	:	:

Description

AT1G51120 (E=3e-128) | AP2 domain-containing transcription factor, putative

Coordinates

chrA05:-:11478523..11479473

Molecular Weight (calculated)

36229.9 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.561

Length

316 amino acids

Sequence
(BLAST)

001: MKPTVSPTAT TKYKGVVQQQ NGHWGAQIYA DHKRIWLGTF KSAAEAAAAY DSASIKLRSF DANSHRNFPW SEITIHEPDF QKSHTTEAVL NMIRESSYQQ
101: KFSDYLIVRS QMVAIANINI VGSKQRRGGG EESTKCFSCT ELFHKELTPS DVGKLNRLVI PKKHAVKHLP FISERDEGET GGAVEDVEVV FYDRAMRQWK
201: FRYCYWKSSQ SFVFTRGWNG FVKEKNLKEK DVIVFYTCDV PSNFKTLEGQ SNKFLMIDVD YFTDKGSVEP KEVNEMVHNV SEREMKTENF FGTKVEEETK
301: SEVSKGGFML FGVRIQ

Best Arabidopsis Sequence Match ( AT1G51120.1 )
(BLAST)

001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ

Arabidopsis Description

AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.