Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29620 | Canola | nucleus | 96.23 | 96.51 |
| Bra030458.1-P | Field mustard | nucleus | 87.83 | 95.89 |
| CDY51249 | Canola | nucleus | 77.68 | 79.06 |
| CDY46564 | Canola | nucleus | 77.68 | 79.06 |
| AT1G51120.1 | Thale cress | nucleus | 75.36 | 73.86 |
| CDY22826 | Canola | nucleus | 71.88 | 73.37 |
| CDY25209 | Canola | nucleus | 73.33 | 71.27 |
| AT1G50680.1 | Thale cress | nucleus | 67.83 | 69.44 |
| CDY37109 | Canola | nucleus | 65.51 | 67.87 |
| CDY37130 | Canola | nucleus | 64.93 | 66.08 |
| CDY22814 | Canola | nucleus | 64.06 | 65.58 |
| CDY29599 | Canola | nucleus | 60.87 | 64.62 |
| CDY65812 | Canola | nucleus | 52.17 | 64.06 |
| CDY37108 | Canola | nucleus, plastid | 59.71 | 60.06 |
| CDY22801 | Canola | nucleus | 59.42 | 58.91 |
| KRG93082 | Soybean | nucleus | 44.35 | 47.96 |
| PGSC0003DMT400085602 | Potato | nucleus | 17.39 | 46.88 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 44.64 | 43.14 |
| Solyc03g083110.1.1 | Tomato | nucleus | 41.74 | 42.99 |
| CDY67348 | Canola | nucleus | 14.2 | 32.67 |
| CDX97996 | Canola | nucleus | 30.14 | 32.0 |
| CDY61361 | Canola | nucleus | 30.14 | 31.8 |
| PGSC0003DMT400092316 | Potato | nucleus | 12.17 | 31.58 |
| GSMUA_Achr11P... | Banana | nucleus | 30.72 | 31.55 |
| CDY58354 | Canola | nucleus | 29.57 | 31.29 |
| CDY72302 | Canola | nucleus | 29.57 | 31.29 |
| Solyc12g098460.1.1 | Tomato | nucleus | 18.84 | 31.1 |
| CDY24391 | Canola | nucleus | 30.43 | 31.07 |
| CDY40973 | Canola | nucleus | 28.12 | 30.79 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 36.81 | 30.68 |
| CDX81561 | Canola | nucleus | 29.86 | 30.03 |
| CDY36099 | Canola | nucleus | 30.43 | 30.0 |
| CDX84999 | Canola | nucleus | 30.43 | 29.66 |
| CDY45849 | Canola | nucleus, plastid | 29.57 | 29.14 |
| CDY16133 | Canola | nucleus | 30.14 | 29.05 |
| CDX99755 | Canola | nucleus | 28.41 | 28.82 |
| CDY43060 | Canola | cytosol | 11.88 | 25.15 |
| CDX83547 | Canola | nucleus | 23.48 | 25.0 |
| CDX73868 | Canola | nucleus | 16.81 | 24.58 |
| CDX84162 | Canola | nucleus | 17.1 | 24.28 |
| CDY43751 | Canola | nucleus | 16.81 | 23.87 |
| CDX75073 | Canola | nucleus | 17.1 | 23.79 |
| CDY08512 | Canola | nucleus | 17.1 | 23.79 |
| CDY62470 | Canola | nucleus | 15.65 | 23.68 |
| CDY01036 | Canola | nucleus | 16.81 | 22.57 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 18.26 | 22.11 |
| CDY47260 | Canola | nucleus | 16.81 | 21.72 |
| EES14747 | Sorghum | plastid | 17.1 | 21.15 |
| PGSC0003DMT400040900 | Potato | nucleus | 8.99 | 20.26 |
| CDY69432 | Canola | nucleus | 16.23 | 20.14 |
| CDX80996 | Canola | nucleus | 15.94 | 20.0 |
| Os02t0455800-01 | Rice | nucleus | 15.36 | 19.85 |
| CDX80053 | Canola | nucleus | 16.81 | 19.53 |
| CDX67872 | Canola | nucleus | 15.94 | 19.3 |
| CDY41564 | Canola | nucleus | 16.52 | 19.19 |
| CDY11388 | Canola | nucleus | 16.23 | 19.18 |
| CDX76605 | Canola | nucleus | 16.23 | 19.18 |
| CDY07140 | Canola | nucleus | 16.81 | 18.95 |
| CDY48008 | Canola | nucleus | 16.52 | 18.75 |
| CDY27515 | Canola | nucleus | 16.52 | 18.75 |
| CDX83351 | Canola | nucleus | 16.52 | 18.51 |
| CDY50908 | Canola | nucleus | 16.81 | 18.41 |
| CDY15208 | Canola | nucleus | 17.1 | 18.32 |
| KXG24821 | Sorghum | nucleus | 15.07 | 18.25 |
| CDY49614 | Canola | nucleus | 16.23 | 18.06 |
| CDX90001 | Canola | nucleus | 17.68 | 17.73 |
| CDY58763 | Canola | nucleus | 16.23 | 17.61 |
| CDY58764 | Canola | nucleus | 16.23 | 17.5 |
| CDX97251 | Canola | nucleus | 17.1 | 17.4 |
| Os02t0455900-00 | Rice | nucleus | 13.62 | 17.28 |
| CDX98911 | Canola | nucleus | 11.3 | 16.32 |
| CDY70080 | Canola | nucleus | 11.3 | 16.32 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078HB03 | UniProt:A0A078HB03 |
| InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY35575 | ProteinID:CDY35575 |
| ProteinID:CDY35575.1 | InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00058893001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 |
| PFAM:PF02362 | PIRSF:PIRSF038123 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 |
| SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0004EDF73C | SEG:seg |
Description
BnaC05g27060DBnaC05g27060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB03]
Coordinates
chrLK032355:-:190815..191852
Molecular Weight (calculated)
39182.1 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.585
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVEQQNG HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE
101: ITVHEPDFQK SHTTEAVLNM IRDSSYSQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV GKLNRLVIPK KHAVKHLPFI
201: SDDQNEGETG GAAEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKNLKEKD VIVFYTCDVP SNFKTLEGQS NKFLMIDVDY FTDKASVEPK
301: EVNKMVHNVS EREMKTENFF GTKVEEETKS EVSKGGFMLF GVRIQ
101: ITVHEPDFQK SHTTEAVLNM IRDSSYSQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV GKLNRLVIPK KHAVKHLPFI
201: SDDQNEGETG GAAEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKNLKEKD VIVFYTCDVP SNFKTLEGQS NKFLMIDVDY FTDKASVEPK
301: EVNKMVHNVS EREMKTENFF GTKVEEETKS EVSKGGFMLF GVRIQ
001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.