Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005886.1-P | Field mustard | nucleus | 69.82 | 71.91 |
| CDY47260 | Canola | nucleus | 69.82 | 71.91 |
| CDY70080 | Canola | nucleus | 52.36 | 60.25 |
| CDX98911 | Canola | nucleus | 52.36 | 60.25 |
| CDY08512 | Canola | nucleus | 48.73 | 54.03 |
| CDY62470 | Canola | nucleus | 43.64 | 52.63 |
| CDX73868 | Canola | nucleus | 44.73 | 52.12 |
| CDY01036 | Canola | nucleus | 48.36 | 51.75 |
| CDY43751 | Canola | nucleus | 43.27 | 48.97 |
| CDX75073 | Canola | nucleus | 42.91 | 47.58 |
| CDX84162 | Canola | nucleus | 41.09 | 46.5 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 30.18 | 41.29 |
| CDY67348 | Canola | nucleus | 22.18 | 40.67 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 28.36 | 40.41 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 34.18 | 38.06 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 33.45 | 38.02 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 36.0 | 37.36 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 36.0 | 37.22 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 36.0 | 37.22 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 35.27 | 36.33 |
| KXG27771 | Sorghum | nucleus | 36.0 | 36.13 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 34.91 | 36.09 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 34.91 | 35.96 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 21.09 | 35.8 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 36.0 | 35.48 |
| GSMUA_Achr11P... | Banana | nucleus | 23.64 | 35.14 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 35.64 | 35.13 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 36.36 | 35.09 |
| CDY43060 | Canola | cytosol | 20.73 | 34.97 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 35.27 | 34.77 |
| KRH67965 | Soybean | nucleus | 36.36 | 34.72 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 34.55 | 34.67 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 35.27 | 34.4 |
| Zm00001d023446_P001 | Maize | nucleus | 34.91 | 33.92 |
| Os11t0156000-01 | Rice | nucleus | 33.82 | 33.33 |
| KRG96220 | Soybean | nucleus | 36.0 | 33.11 |
| KRH32791 | Soybean | nucleus | 40.36 | 32.94 |
| KRH72242 | Soybean | nucleus | 40.73 | 32.56 |
| Zm00001d052591_P001 | Maize | nucleus | 35.27 | 31.6 |
| Solyc09g010230.1.1 | Tomato | nucleus | 37.82 | 30.14 |
| PGSC0003DMT400023077 | Potato | nucleus | 36.36 | 29.85 |
| KXG22988 | Sorghum | plastid | 34.18 | 29.38 |
| CDY69432 | Canola | nucleus | 28.0 | 27.7 |
| CDY48008 | Canola | nucleus | 30.18 | 27.3 |
| CDY41564 | Canola | nucleus | 29.45 | 27.27 |
| CDX80053 | Canola | nucleus | 29.45 | 27.27 |
| CDX67872 | Canola | nucleus | 28.0 | 27.02 |
| CDY27515 | Canola | nucleus | 29.82 | 26.97 |
| CDX76605 | Canola | nucleus | 28.0 | 26.37 |
| CDY11388 | Canola | nucleus | 28.0 | 26.37 |
| CDY50908 | Canola | nucleus | 30.18 | 26.35 |
| CDX83351 | Canola | nucleus | 29.09 | 25.97 |
| CDY58354 | Canola | nucleus | 29.82 | 25.15 |
| CDY72302 | Canola | nucleus | 29.82 | 25.15 |
| CDX97996 | Canola | nucleus | 29.45 | 24.92 |
| CDY61361 | Canola | nucleus | 29.45 | 24.77 |
| CDY15208 | Canola | nucleus | 28.0 | 23.91 |
| CDY58763 | Canola | nucleus | 27.64 | 23.9 |
| CDY40973 | Canola | nucleus | 27.27 | 23.81 |
| CDY58764 | Canola | nucleus | 27.64 | 23.75 |
| CDY24391 | Canola | nucleus | 29.09 | 23.67 |
| CDX81561 | Canola | nucleus | 29.45 | 23.62 |
| CDY45849 | Canola | nucleus, plastid | 29.82 | 23.43 |
| CDY36099 | Canola | nucleus | 29.45 | 23.14 |
| CDX90001 | Canola | nucleus | 28.0 | 22.38 |
| CDX84999 | Canola | nucleus | 28.73 | 22.32 |
| CDX97251 | Canola | nucleus | 27.27 | 22.12 |
| CDX99755 | Canola | nucleus | 27.27 | 22.06 |
| CDY07140 | Canola | nucleus | 24.36 | 21.9 |
| CDY16133 | Canola | nucleus | 28.36 | 21.79 |
| CDY49614 | Canola | nucleus | 24.36 | 21.61 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 14.91 | 19.52 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 23.64 | 19.12 |
| CDY29599 | Canola | nucleus | 21.45 | 18.15 |
| CDY65812 | Canola | nucleus | 18.18 | 17.79 |
| CDX83547 | Canola | nucleus | 20.73 | 17.59 |
| CDY37130 | Canola | nucleus | 20.73 | 16.81 |
| CDY46564 | Canola | nucleus | 20.73 | 16.81 |
| CDY51249 | Canola | nucleus | 20.73 | 16.81 |
| CDY22814 | Canola | nucleus | 20.0 | 16.32 |
| CDY29620 | Canola | nucleus | 20.36 | 16.28 |
| CDY22801 | Canola | nucleus | 20.36 | 16.09 |
| CDY22826 | Canola | nucleus | 19.64 | 15.98 |
| CDY35575 | Canola | nucleus | 20.0 | 15.94 |
| CDY37109 | Canola | nucleus | 19.27 | 15.92 |
| CDY25209 | Canola | nucleus | 19.27 | 14.93 |
| CDY37108 | Canola | nucleus, plastid | 17.45 | 13.99 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078CV17 | InterPro:B3_DNA-bd | EnsemblPlants:CDX80996 | ProteinID:CDX80996 |
| ProteinID:CDX80996.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00134427001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EF0DA5 | SEG:seg | : |
Description
BnaC03g02500D
Coordinates
chrLK031823:-:1196351..1199525
Molecular Weight (calculated)
31715.1 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.735
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVNHYSTDN HHALFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR
101: YSYWNSSQSY VLTKGWSRYV KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA HSEYSHYGIK LTTLYTNIYI
201: FHIRKYRYKE TISLLQKKLN KKSAILYKGI SFATAAAAES TTTKTCTIIT LLTPQPHNMN IGFTGDTMKQ VEDRR
101: YSYWNSSQSY VLTKGWSRYV KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA HSEYSHYGIK LTTLYTNIYI
201: FHIRKYRYKE TISLLQKKLN KKSAILYKGI SFATAAAAES TTTKTCTIIT LLTPQPHNMN IGFTGDTMKQ VEDRR
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.