Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G460900.1 | Wheat | nucleus | 96.25 | 96.25 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 94.38 | 94.74 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 93.63 | 94.34 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 79.03 | 75.63 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 74.53 | 72.63 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 45.32 | 60.2 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 43.07 | 59.59 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 51.69 | 55.87 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 49.44 | 54.55 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 29.59 | 48.77 |
| Bra017262.1-P | Field mustard | nucleus | 41.57 | 45.31 |
| CDY43751 | Canola | nucleus | 41.2 | 45.27 |
| CDX84162 | Canola | nucleus | 40.82 | 44.86 |
| AT2G36080.1 | Thale cress | nucleus | 40.82 | 44.67 |
| CDX75073 | Canola | nucleus | 41.2 | 44.35 |
| Bra005301.1-P | Field mustard | nucleus | 41.2 | 44.35 |
| CDX73868 | Canola | nucleus | 38.58 | 43.64 |
| Bra001411.1-P | Field mustard | nucleus | 38.58 | 43.64 |
| CDY08512 | Canola | nucleus | 40.07 | 43.15 |
| CDY01036 | Canola | nucleus | 41.2 | 42.8 |
| GSMUA_Achr11P... | Banana | nucleus | 29.59 | 42.7 |
| CDY62470 | Canola | nucleus | 36.33 | 42.54 |
| Bra034828.1-P | Field mustard | nucleus | 40.45 | 41.86 |
| Bra041023.1-P | Field mustard | nucleus | 40.07 | 40.53 |
| AT5G06250.4 | Thale cress | nucleus | 42.32 | 39.79 |
| CDY47260 | Canola | nucleus | 39.7 | 39.7 |
| Bra005886.1-P | Field mustard | nucleus | 39.7 | 39.7 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 28.46 | 38.78 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 40.82 | 38.25 |
| KRG96220 | Soybean | nucleus | 40.82 | 36.45 |
| KRH67965 | Soybean | nucleus | 38.95 | 36.11 |
| PGSC0003DMT400072354 | Potato | nucleus | 38.58 | 35.76 |
| KRH32791 | Soybean | nucleus | 44.57 | 35.31 |
| CDX80996 | Canola | nucleus | 36.33 | 35.27 |
| TraesCS3B01G065000.1 | Wheat | mitochondrion, nucleus | 28.46 | 34.86 |
| KRH72242 | Soybean | nucleus | 44.57 | 34.59 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 35.21 | 34.18 |
| Solyc10g083210.1.1 | Tomato | nucleus | 39.33 | 34.09 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 38.95 | 32.6 |
| Solyc09g010230.1.1 | Tomato | nucleus | 41.95 | 32.46 |
| PGSC0003DMT400023077 | Potato | nucleus | 40.45 | 32.24 |
| Bra009171.1-P | Field mustard | nucleus | 28.09 | 31.38 |
| CDX98911 | Canola | nucleus | 28.09 | 31.38 |
| CDY70080 | Canola | nucleus | 28.09 | 31.38 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 42.32 | 30.46 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 34.46 | 27.06 |
| TraesCS4B01G325600.1 | Wheat | nucleus | 30.71 | 26.62 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 38.2 | 24.94 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 37.83 | 24.69 |
| TraesCS4B01G325700.1 | Wheat | plastid | 30.71 | 24.4 |
| TraesCS3B01G293000.1 | Wheat | nucleus | 34.08 | 23.76 |
| TraesCS3B01G064900.1 | Wheat | nucleus | 31.46 | 23.6 |
| TraesCS3B01G065100.1 | Wheat | nucleus | 30.71 | 23.43 |
| TraesCS1B01G392300.1 | Wheat | nucleus | 34.08 | 23.27 |
| TraesCS1B01G392000.1 | Wheat | nucleus | 34.46 | 22.38 |
| TraesCS1B01G392200.1 | Wheat | nucleus, plastid | 33.33 | 21.39 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G482400.1 | EnsemblPlantsGene:TraesCS2B01G482400 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF19 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:680193945..680194973
Molecular Weight (calculated)
29924.9 Da
IEP (calculated)
7.766
GRAVY (calculated)
-0.756
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMHPLAQGH PQAWPWGVAM YTNIHYHHQY EREHLFEKSL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GDKDLLLSFE DEAGKPWRFR YSYWTSSQSY
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFIHCR RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS PANSHAYRRS VEQDHSEMLH
201: AGDSPREADA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA ATPMYGYTHQ SPYAAAVATV PTYWGSS
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFIHCR RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS PANSHAYRRS VEQDHSEMLH
201: AGDSPREADA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA ATPMYGYTHQ SPYAAAVATV PTYWGSS
001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.