Factsheet for TraesCS1B01G392300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G372300.1	Wheat	nucleus	92.58	92.35
TraesCS1D01G378900.1	Wheat	nucleus	91.82	91.58
HORVU1Hr1G082670.6	Barley	nucleus	87.98	87.53
TraesCS1B01G392000.1	Wheat	nucleus	88.75	84.43
TraesCS1B01G392200.1	Wheat	nucleus, plastid	87.47	82.21
KXG22484	Sorghum	nucleus, plastid	74.42	71.32
Zm00001d009468_P001	Maize	nucleus, plastid	68.29	71.2
Os05t0549800-01	Rice	nucleus	61.64	70.26
TraesCS3B01G293000.1	Wheat	nucleus	67.77	69.19
GSMUA_Achr1P21250_001	Banana	nucleus	44.25	58.84
HORVU4Hr1G074300.4	Barley	nucleus	21.99	57.33
KRH34761	Soybean	nucleus	50.9	56.7
CDX97996	Canola	nucleus	47.06	56.62
CDY40973	Canola	nucleus	45.52	56.51
CDY72302	Canola	nucleus	47.06	56.44
CDY58354	Canola	nucleus	46.8	56.13
CDY61361	Canola	nucleus	46.8	55.96
KRG92025	Soybean	nucleus	51.15	55.25
AT1G68840.1	Thale cress	nucleus	49.62	55.11
CDX81561	Canola	nucleus	48.34	55.1
CDX84999	Canola	nucleus	49.87	55.08
CDY24391	Canola	nucleus	47.31	54.73
CDY45849	Canola	nucleus, plastid	48.59	54.29
Bra038346.1-P	Field mustard	nucleus, plastid	48.59	54.29
CDY36099	Canola	nucleus	48.59	54.29
CDY16133	Canola	nucleus	49.62	54.19
Bra019821.1-P	Field mustard	nucleus	47.06	53.96
Bra026917.1-P	Field mustard	nucleus	46.8	53.82
AT1G13260.1	Thale cress	nucleus	47.31	53.78
AT3G25730.1	Thale cress	nucleus	45.78	53.75
Bra026509.1-P	Field mustard	nucleus	44.5	53.37
TraesCS4B01G325600.1	Wheat	nucleus	41.94	53.25
GSMUA_Achr6P01420_001	Banana	nucleus	42.97	53.16
Bra011002.1-P	Field mustard	nucleus	48.59	52.92
CDX99755	Canola	nucleus	45.78	52.65
AT1G25560.1	Thale cress	nucleus	48.34	52.35
Bra024735.1-P	Field mustard	nucleus	49.36	51.88
KRH75484	Soybean	nucleus	50.9	51.82
TraesCS3B01G064900.1	Wheat	nucleus	46.8	51.4
VIT_01s0011g03070.t01	Wine grape	nucleus	49.62	51.32
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	28.39	50.92
KRH70603	Soybean	nucleus	52.17	50.87
TraesCS4B01G325700.1	Wheat	plastid	43.48	50.6
CDX83547	Canola	nucleus	41.69	50.31
Solyc05g009790.1.1	Tomato	nucleus	50.38	49.87
TraesCS3B01G065100.1	Wheat	nucleus	44.5	49.71
PGSC0003DMT400002125	Potato	nucleus	50.13	49.25
TraesCS7B01G362500.1	Wheat	nucleus	19.95	39.8
TraesCS5B01G126200.1	Wheat	nucleus	24.04	35.47
TraesCS1B01G215000.1	Wheat	nucleus	24.3	34.55
TraesCS2B01G482400.1	Wheat	nucleus	23.27	34.08
TraesCS4B01G117100.1	Wheat	nucleus	24.3	34.05
TraesCS4B01G348500.1	Wheat	nucleus	24.3	29.78
TraesCS6B01G286900.1	Wheat	nucleus	28.39	27.14
TraesCS2B01G412700.1	Wheat	nucleus	28.13	26.89

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1B01G392300	EnsemblPlants:TraesCS1B01G392300.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:625145230..625146405

Molecular Weight (calculated)

42108.5 Da

IEP (calculated)

10.188

GRAVY (calculated)

-0.479

Length

391 amino acids

Sequence
(BLAST)

001: MDSARSCLVD DVSSGASTGK KASPSPAAAA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG KLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAQR FRGRDAVTNF RPLAESDRED AAELRFLAAR SKAEVVDMLR KHTYPDELAQ YKHAYFADAA ASSPTSSSVP PASSPSSAAA PSPAARREHL
201: FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPSAGAAVSG ECKGMLLNFD DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDA VGFYRSASGN
301: NQLFIECKLR SKTKTTTTTT LTKATAATPS PAPVVRTVRL FGVDLLTAPA PRHAPEHENY GMTKRSRDAD VAAPTPVHAV WKKRCMDFAL T

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.