Factsheet for TraesCS1B01G392000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G392300.1	Wheat	nucleus	84.43	88.75
HORVU1Hr1G082670.6	Barley	nucleus	83.7	87.53
TraesCS1B01G392200.1	Wheat	nucleus, plastid	88.56	87.5
TraesCS1D01G378500.1	Wheat	nucleus	87.35	85.68
TraesCS1A01G372100.1	Wheat	nucleus	88.08	81.9
KXG22484	Sorghum	nucleus, plastid	70.56	71.08
Zm00001d009468_P001	Maize	nucleus, plastid	64.72	70.93
Os05t0549800-01	Rice	nucleus	59.12	70.85
TraesCS3B01G293000.1	Wheat	nucleus	63.75	68.41
GSMUA_Achr1P21250_001	Banana	nucleus	43.55	60.88
CDY72302	Canola	nucleus	45.01	56.75
CDX97996	Canola	nucleus	44.77	56.62
CDY58354	Canola	nucleus	44.77	56.44
KRH34761	Soybean	nucleus	48.18	56.41
HORVU4Hr1G074300.4	Barley	nucleus	20.44	56.0
CDY61361	Canola	nucleus	44.53	55.96
CDY40973	Canola	nucleus	42.82	55.87
KRG92025	Soybean	nucleus	48.66	55.25
CDY24391	Canola	nucleus	45.26	55.03
CDY36099	Canola	nucleus	46.47	54.57
CDX84999	Canola	nucleus	46.96	54.52
AT1G68840.1	Thale cress	nucleus	46.47	54.26
CDX81561	Canola	nucleus	45.26	54.23
Bra026917.1-P	Field mustard	nucleus	44.77	54.12
Bra019821.1-P	Field mustard	nucleus	44.77	53.96
TraesCS4B01G325600.1	Wheat	nucleus	40.39	53.9
AT1G13260.1	Thale cress	nucleus	45.01	53.78
CDY16133	Canola	nucleus	46.72	53.63
Bra011002.1-P	Field mustard	nucleus	46.47	53.2
Bra038346.1-P	Field mustard	nucleus, plastid	45.26	53.14
CDY45849	Canola	nucleus, plastid	45.26	53.14
AT3G25730.1	Thale cress	nucleus	42.82	52.85
Bra026509.1-P	Field mustard	nucleus	41.85	52.76
VIT_01s0011g03070.t01	Wine grape	nucleus	48.42	52.65
GSMUA_Achr6P01420_001	Banana	nucleus	40.39	52.53
AT1G25560.1	Thale cress	nucleus	45.99	52.35
CDX99755	Canola	nucleus	43.07	52.06
KRH75484	Soybean	nucleus	48.18	51.56
Bra024735.1-P	Field mustard	nucleus	46.47	51.34
TraesCS4B01G325700.1	Wheat	plastid	41.85	51.19
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	27.01	50.92
KRH70603	Soybean	nucleus	49.63	50.87
TraesCS3B01G064900.1	Wheat	nucleus	44.04	50.84
TraesCS3B01G065100.1	Wheat	nucleus	42.82	50.29
Solyc05g009790.1.1	Tomato	nucleus	48.18	50.13
PGSC0003DMT400002125	Potato	nucleus	47.93	49.5
CDX83547	Canola	nucleus	38.69	49.07
TraesCS7B01G362500.1	Wheat	nucleus	19.22	40.31
TraesCS5B01G126200.1	Wheat	nucleus	23.36	36.23
TraesCS1B01G215000.1	Wheat	nucleus	23.6	35.27
TraesCS2B01G482400.1	Wheat	nucleus	22.38	34.46
TraesCS4B01G117100.1	Wheat	nucleus	22.87	33.69
TraesCS4B01G348500.1	Wheat	nucleus	23.6	30.41
TraesCS6B01G286900.1	Wheat	nucleus	27.49	27.63
TraesCS2B01G412700.1	Wheat	nucleus	27.49	27.63

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1B01G392000	EnsemblPlants:TraesCS1B01G392000.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:624970835..624972070

Molecular Weight (calculated)

44090.8 Da

IEP (calculated)

9.791

GRAVY (calculated)

-0.392

Length

411 amino acids

Sequence
(BLAST)

001: MESSRSCLVD DVSSGSSTGN KASPVPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRGG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAQR FRGRDAVTNF RPLAESDPDD AAELRFLAAL SKAEVVDMLR KHTYPDELAQ HKRAYFAAAA ASSHTSSSLP PASSPSSPAA PSPAARREHL
201: FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPAAGAAVPG ECKGVLLNFD DAAGKLWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDA VVFYRSASGN
301: NQLFIDCKLR SKTTTTTTAF VNVAAAAPSP APVTRTVRLF GVDLLTAPAP EHEEYGMAKT NKRSMDASVE APTPAHAVWK KRCVDFALIP QCPRSRDQLV
401: GVQAAESTFA L

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.