Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G134700.1 | Wheat | nucleus | 98.11 | 97.74 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 94.34 | 93.63 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 92.45 | 92.11 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 80.75 | 76.7 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 75.85 | 73.36 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 46.79 | 61.69 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 43.4 | 59.59 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 53.58 | 57.49 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 50.19 | 54.96 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 29.43 | 48.15 |
| Bra017262.1-P | Field mustard | nucleus | 43.77 | 47.35 |
| CDY43751 | Canola | nucleus | 43.4 | 47.33 |
| AT2G36080.1 | Thale cress | nucleus | 43.02 | 46.72 |
| CDX84162 | Canola | nucleus | 42.64 | 46.5 |
| CDX75073 | Canola | nucleus | 43.4 | 46.37 |
| Bra005301.1-P | Field mustard | nucleus | 43.4 | 46.37 |
| Bra001411.1-P | Field mustard | nucleus | 40.38 | 45.34 |
| CDX73868 | Canola | nucleus | 40.38 | 45.34 |
| CDY01036 | Canola | nucleus | 43.02 | 44.36 |
| CDY08512 | Canola | nucleus | 41.51 | 44.35 |
| CDY62470 | Canola | nucleus | 37.74 | 43.86 |
| GSMUA_Achr11P... | Banana | nucleus | 30.57 | 43.78 |
| Bra034828.1-P | Field mustard | nucleus | 42.26 | 43.41 |
| Bra041023.1-P | Field mustard | nucleus | 41.89 | 42.05 |
| Bra005886.1-P | Field mustard | nucleus | 40.75 | 40.45 |
| CDY47260 | Canola | nucleus | 40.75 | 40.45 |
| AT5G06250.4 | Thale cress | nucleus | 43.02 | 40.14 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 42.26 | 39.3 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 29.06 | 39.29 |
| PGSC0003DMT400072354 | Potato | nucleus | 40.38 | 37.15 |
| KRG96220 | Soybean | nucleus | 41.89 | 37.12 |
| KRH67965 | Soybean | nucleus | 40.0 | 36.81 |
| KRH32791 | Soybean | nucleus | 46.79 | 36.8 |
| CDX80996 | Canola | nucleus | 37.36 | 36.0 |
| KRH72242 | Soybean | nucleus | 46.42 | 35.76 |
| Solyc10g083210.1.1 | Tomato | nucleus | 41.13 | 35.39 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 35.85 | 34.55 |
| TraesCS3B01G065000.1 | Wheat | mitochondrion, nucleus | 28.3 | 34.4 |
| Solyc09g010230.1.1 | Tomato | nucleus | 43.77 | 33.62 |
| PGSC0003DMT400023077 | Potato | nucleus | 42.26 | 33.43 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 38.87 | 32.29 |
| Bra009171.1-P | Field mustard | nucleus | 29.06 | 32.22 |
| CDY70080 | Canola | nucleus | 29.06 | 32.22 |
| CDX98911 | Canola | nucleus | 29.06 | 32.22 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 43.4 | 31.0 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 35.47 | 27.65 |
| TraesCS4B01G325600.1 | Wheat | nucleus | 31.32 | 26.95 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 39.25 | 25.43 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 38.11 | 24.69 |
| TraesCS4B01G325700.1 | Wheat | plastid | 30.94 | 24.4 |
| TraesCS3B01G293000.1 | Wheat | nucleus | 35.09 | 24.28 |
| TraesCS1B01G392300.1 | Wheat | nucleus | 35.47 | 24.04 |
| TraesCS3B01G065100.1 | Wheat | nucleus | 31.32 | 23.71 |
| TraesCS3B01G064900.1 | Wheat | nucleus | 31.7 | 23.6 |
| TraesCS1B01G392000.1 | Wheat | nucleus | 36.23 | 23.36 |
| TraesCS1B01G392200.1 | Wheat | nucleus, plastid | 35.09 | 22.36 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G126200.1 | EnsemblPlantsGene:TraesCS5B01G126200 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF19 | PFAM:PF02362 | PFscan:PS50863 | SMART:SM01019 | SUPFAM:SSF101936 | TIGR:cd10017 |
| MapMan:15.5.5.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:230247502..230248524
Molecular Weight (calculated)
29863.8 Da
IEP (calculated)
8.100
GRAVY (calculated)
-0.760
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFIGCR RRGESAPSPV RVPPPTLNAG EQRPWSPMCY STSGSYPTSP ANSYAYRRSV EQDHSDMLHA
201: GESQREADAK SSTASAPPSR RLRLFGVNLD CGPEPEAEAI TPMYGYTHQS PYAAVATVPS YWGSS
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFIGCR RRGESAPSPV RVPPPTLNAG EQRPWSPMCY STSGSYPTSP ANSYAYRRSV EQDHSDMLHA
201: GESQREADAK SSTASAPPSR RLRLFGVNLD CGPEPEAEAI TPMYGYTHQS PYAAVATVPS YWGSS
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMVILT LL
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMVILT LL
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.