Factsheet for HORVU5Hr1G040620.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G127100.1	Wheat	nucleus	74.09	76.32
TraesCS5D01G134700.1	Wheat	nucleus	73.72	75.94
TraesCS5B01G126200.1	Wheat	nucleus	73.36	75.85
TraesCS2B01G482400.1	Wheat	nucleus	72.63	74.53
TraesCS2A01G460700.1	Wheat	nucleus	71.53	73.68
TraesCS2D01G460900.1	Wheat	nucleus	71.53	73.41
HORVU4Hr1G021650.22	Barley	nucleus	65.69	64.52
GSMUA_Achr9P02600_001	Banana	nucleus	37.96	53.89
GSMUA_Achr3P19210_001	Banana	nucleus	39.42	53.73
GSMUA_Achr6P35600_001	Banana	nucleus	43.8	49.59
GSMUA_Achr6P13140_001	Banana	nucleus	44.53	49.39
GSMUA_Achr9P08980_001	Banana	nucleus	28.47	48.15
HORVU4Hr1G074300.4	Barley	nucleus	23.72	43.33
HORVU3Hr1G064590.1	Barley	nucleus	30.29	42.78
CDY43751	Canola	nucleus	37.59	42.39
Bra017262.1-P	Field mustard	nucleus	37.59	42.04
CDY62470	Canola	nucleus	34.31	41.23
CDX84162	Canola	nucleus	36.5	41.15
CDX75073	Canola	nucleus	37.23	41.13
Bra005301.1-P	Field mustard	nucleus	37.23	41.13
CDX73868	Canola	nucleus	35.4	41.1
Bra001411.1-P	Field mustard	nucleus	35.4	41.1
AT2G36080.1	Thale cress	nucleus	36.5	40.98
CDY08512	Canola	nucleus	35.77	39.52
GSMUA_Achr11P...	Banana	nucleus	26.28	38.92
CDY01036	Canola	nucleus	36.5	38.91
Bra034828.1-P	Field mustard	nucleus	36.13	38.37
Bra041023.1-P	Field mustard	nucleus	35.4	36.74
CDY47260	Canola	nucleus	35.77	36.7
Bra005886.1-P	Field mustard	nucleus	35.77	36.7
AT5G06250.4	Thale cress	nucleus	37.59	36.27
VIT_08s0007g02810.t01	Wine grape	nucleus	37.59	36.14
HORVU0Hr1G022200.1	Barley	nucleus	25.91	35.5
CDX80996	Canola	nucleus	34.67	34.55
PGSC0003DMT400072354	Potato	nucleus	36.13	34.38
Solyc10g083210.1.1	Tomato	nucleus	36.86	32.79
KRG96220	Soybean	nucleus	35.77	32.78
KRH32791	Soybean	nucleus	39.42	32.05
KRH67965	Soybean	nucleus	33.58	31.94
PGSC0003DMT400023077	Potato	nucleus	38.32	31.34
KRH72242	Soybean	nucleus	39.05	31.1
HORVU1Hr1G051780.2	Barley	nucleus	33.21	31.06
Solyc09g010230.1.1	Tomato	nucleus	38.69	30.72
HORVU7Hr1G046950.1	Barley	nucleus	30.66	30.66
HORVU3Hr1G010200.1	Barley	mitochondrion	24.45	30.59
HORVU7Hr1G002230.1	Barley	nucleus	24.45	30.45
HORVU4Hr1G084950.3	Barley	nucleus	35.04	28.15
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	36.86	27.22
CDY70080	Canola	nucleus	22.99	26.36
CDX98911	Canola	nucleus	22.99	26.36
Bra009171.1-P	Field mustard	nucleus	22.99	26.36
HORVU3Hr1G010100.2	Barley	nucleus	29.2	25.0
GSMUA_Achr6P18320_001	Banana	nucleus	31.02	25.0
HORVU3Hr1G064640.4	Barley	nucleus	32.85	23.68
HORVU6Hr1G066190.2	Barley	nucleus	35.04	23.47
HORVU4Hr1G082090.2	Barley	mitochondrion	29.2	23.26
HORVU3Hr1G010060.1	Barley	nucleus	29.2	22.73
HORVU1Hr1G082670.6	Barley	nucleus	31.02	21.63
HORVU3Hr1G010240.1	Barley	nucleus	27.01	21.26
HORVU3Hr1G010190.5	Barley	nucleus	27.01	19.27
HORVU4Hr1G082030.2	Barley	nucleus	17.52	18.9
HORVU3Hr1G010140.3	Barley	nucleus	25.91	18.3
HORVU3Hr1G010260.2	Barley	mitochondrion	13.14	18.18

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	UniProt:A0A287QXP0	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G040620	EnsemblPlants:HORVU5Hr1G040620.4	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF19	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000B4797C7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:302988340..302989243

Molecular Weight (calculated)

31555.2 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.895

Length

274 amino acids

Sequence
(BLAST)

001: MAMHPLCQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDFP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY
101: VLTKGWSRYV KEKQLDAGDV VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNS GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHNDMLH
201: LTPFSGEFLQ ASHRERQTPR AARHRRRRRD VSGCLASTST AVRSQRQKQQ RQCTAIPTRT PTLQCPRCQL TGEY

Best Arabidopsis Sequence Match ( AT3G11580.5 )
(BLAST)

001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGKFKPFIS
201: SFVFSFSLIY MSDLYSSLFS FKICLFHKNR

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.