Factsheet for HORVU4Hr1G082030.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G325700.1	Wheat	plastid	79.53	60.12
TraesCS4D01G322600.1	Wheat	nucleus	82.28	57.73
TraesCS5A01G497900.1	Wheat	nucleus	83.07	57.34
HORVU3Hr1G010240.1	Barley	nucleus	70.87	51.72
HORVU3Hr1G010190.5	Barley	nucleus	74.02	48.96
Os01t0141000-01	Rice	nucleus, plastid	67.32	46.85
HORVU3Hr1G010100.2	Barley	nucleus	55.91	44.38
Zm00001d039907_P001	Maize	nucleus	65.35	43.92
EES02511	Sorghum	nucleus	65.75	43.04
HORVU3Hr1G010060.1	Barley	nucleus	57.09	41.19
HORVU4Hr1G082090.2	Barley	mitochondrion	55.12	40.7
HORVU3Hr1G010200.1	Barley	mitochondrion	32.68	37.9
HORVU3Hr1G064640.4	Barley	nucleus	47.24	31.58
HORVU1Hr1G082670.6	Barley	nucleus	46.06	29.77
HORVU4Hr1G074300.4	Barley	nucleus	16.93	28.67
HORVU3Hr1G064590.1	Barley	nucleus	18.5	24.23
HORVU0Hr1G022200.1	Barley	nucleus	17.32	22.0
HORVU3Hr1G010260.2	Barley	mitochondrion	16.14	20.71
HORVU7Hr1G002230.1	Barley	nucleus	17.32	20.0
HORVU3Hr1G010140.3	Barley	nucleus	27.17	17.78
HORVU5Hr1G040620.4	Barley	nucleus	18.9	17.52
HORVU4Hr1G021650.22	Barley	nucleus	18.11	16.49
HORVU7Hr1G046950.1	Barley	nucleus	17.32	16.06
HORVU1Hr1G051780.2	Barley	nucleus	18.11	15.7
HORVU4Hr1G084950.3	Barley	nucleus	18.11	13.49
HORVU6Hr1G066190.2	Barley	nucleus	20.87	12.96

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	UniProt:A0A287PV49	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G082030	EnsemblPlants:HORVU4Hr1G082030.2	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF9	SMART:SM00380	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI000B461C67	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:620842345..620843538

Molecular Weight (calculated)

28130.8 Da

IEP (calculated)

9.576

GRAVY (calculated)

-0.715

Length

254 amino acids

Sequence
(BLAST)

001: PNDTCQETTA KQQSMGVQIL SSTREHSPQY SSGESTATTE SGATRRLPTT LGLPVAIPDE AVTSRSASAQ SASSRFKGVV SQPKGRWCAE IYDRRARVWI
101: GTFPNEDAAA RAYDVAALRY HGRDAATNFP RVPASTELAF LEAHSKAEIV DMLQKHTYAD ELRQGLRHGR GTGGRAEPTP SWARVPLFEK AMTPSDVGKL
201: NRVVMPKHHA EKHFPLNRTP ETTPTADKDV LLNFEDGQGK VWRFRYSYWN SSQS

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.