Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G074300.4 | Barley | nucleus | 42.27 | 54.67 |
| HORVU3Hr1G064640.4 | Barley | nucleus | 100.0 | 51.05 |
| TraesCS3B01G293000.1 | Wheat | nucleus | 89.69 | 45.43 |
| TraesCS3D01G260100.1 | Wheat | nucleus | 85.57 | 44.38 |
| TraesCS3A01G259900.1 | Wheat | nucleus | 83.51 | 43.2 |
| HORVU3Hr1G010200.1 | Barley | mitochondrion | 44.85 | 39.73 |
| Os01t0693400-01 | Rice | nucleus | 77.32 | 38.17 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 38.66 | 37.5 |
| Zm00001d043782_P001 | Maize | nucleus | 73.71 | 36.76 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 39.69 | 35.0 |
| Zm00001d011639_P001 | Maize | nucleus | 72.68 | 34.81 |
| EES03472 | Sorghum | nucleus, plastid | 73.71 | 34.62 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 53.09 | 32.59 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 48.45 | 31.97 |
| HORVU1Hr1G082670.6 | Barley | nucleus | 64.43 | 31.81 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 45.88 | 30.38 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 42.78 | 30.29 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 41.24 | 29.2 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 41.75 | 29.03 |
| CDX97996 | Canola | nucleus | 47.94 | 28.62 |
| CDX81561 | Canola | nucleus | 50.52 | 28.57 |
| KRH34761 | Soybean | nucleus | 51.55 | 28.49 |
| CDY61361 | Canola | nucleus | 47.94 | 28.44 |
| CDY58354 | Canola | nucleus | 47.42 | 28.22 |
| CDY72302 | Canola | nucleus | 47.42 | 28.22 |
| AT1G68840.1 | Thale cress | nucleus | 51.03 | 28.12 |
| CDY45849 | Canola | nucleus, plastid | 50.52 | 28.0 |
| Bra038346.1-P | Field mustard | nucleus, plastid | 50.52 | 28.0 |
| CDY24391 | Canola | nucleus | 48.45 | 27.81 |
| CDY36099 | Canola | nucleus | 50.0 | 27.71 |
| KRG92025 | Soybean | nucleus | 51.55 | 27.62 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 48.45 | 27.57 |
| Bra019821.1-P | Field mustard | nucleus | 48.45 | 27.57 |
| Bra026917.1-P | Field mustard | nucleus | 47.94 | 27.35 |
| HORVU3Hr1G010100.2 | Barley | nucleus | 44.85 | 27.19 |
| CDX84999 | Canola | nucleus | 49.48 | 27.12 |
| CDY16133 | Canola | nucleus | 50.0 | 27.09 |
| AT1G13260.1 | Thale cress | nucleus | 47.94 | 27.03 |
| Bra011002.1-P | Field mustard | nucleus | 50.0 | 27.02 |
| AT1G25560.1 | Thale cress | nucleus | 49.48 | 26.59 |
| HORVU3Hr1G010240.1 | Barley | nucleus | 47.42 | 26.44 |
| AT3G25730.1 | Thale cress | nucleus | 45.36 | 26.43 |
| CDY40973 | Canola | nucleus | 42.78 | 26.35 |
| KRH75484 | Soybean | nucleus | 52.06 | 26.3 |
| VIT_01s0011g03070.t01 | Wine grape | nucleus | 51.03 | 26.19 |
| CDX99755 | Canola | nucleus | 45.36 | 25.88 |
| Bra024735.1-P | Field mustard | nucleus | 49.48 | 25.81 |
| Bra026509.1-P | Field mustard | nucleus | 42.78 | 25.46 |
| PGSC0003DMT400002125 | Potato | nucleus | 51.55 | 25.13 |
| Solyc05g009790.1.1 | Tomato | nucleus | 51.03 | 25.06 |
| HORVU4Hr1G082090.2 | Barley | mitochondrion | 44.33 | 25.0 |
| KRH70603 | Soybean | nucleus | 51.55 | 24.94 |
| HORVU3Hr1G010060.1 | Barley | nucleus | 44.85 | 24.72 |
| HORVU3Hr1G010140.3 | Barley | nucleus | 48.97 | 24.48 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 49.48 | 23.47 |
| HORVU3Hr1G010190.5 | Barley | nucleus | 45.36 | 22.92 |
| CDX83547 | Canola | nucleus | 34.02 | 20.37 |
| HORVU4Hr1G082030.2 | Barley | nucleus | 24.23 | 18.5 |
| HORVU3Hr1G010260.2 | Barley | mitochondrion | 14.95 | 14.65 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | UniProt:A0A287LD39 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G064590 | EnsemblPlants:HORVU3Hr1G064590.1 | InterPro:IPR003340 | InterPro:IPR015300 |
| PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF21 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI000B477058 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:493079466..493080649
Molecular Weight (calculated)
20987.0 Da
IEP (calculated)
10.019
GRAVY (calculated)
-0.414
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: GGSASPPSPA AVREHLFDKT VTPSDVGKLN RLVIPKQNAE KHFPLQLPAG GGESKGLLLN FEDDAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLGAG
101: DVVGFYRSAA GRTGEDSKFF IDCRLRPNTN TAAEADPVDQ SSAPVQKAVR LFGVDLLAAP EQGMPGGCKR ARDLVKPPPP KVAFKKQCIE LALA
101: DVVGFYRSAA GRTGEDSKFF IDCRLRPNTN TAAEADPVDQ SSAPVQKAVR LFGVDLLAAP EQGMPGGCKR ARDLVKPPPP KVAFKKQCIE LALA
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.