CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043782_P001	Maize	nucleus	87.65	93.06
Zm00001d011639_P001	Maize	nucleus	83.29	84.94
TraesCS3D01G260100.1	Wheat	nucleus	74.33	82.09
TraesCS3B01G293000.1	Wheat	nucleus	75.54	81.46
TraesCS3A01G259900.1	Wheat	nucleus	72.88	80.27
HORVU3Hr1G064640.4	Barley	nucleus	72.64	78.95
Os01t0693400-01	Rice	nucleus	74.33	78.12
HORVU3Hr1G064590.1	Barley	nucleus	34.62	73.71
KXG22484	Sorghum	nucleus, plastid	67.8	68.63
GSMUA_Achr1P21250_001	Banana	nucleus	43.34	60.88
CDX97996	Canola	nucleus	46.73	59.38
CDY72302	Canola	nucleus	46.49	58.9
CDY58354	Canola	nucleus	46.49	58.9
CDY61361	Canola	nucleus	46.49	58.72
CDY40973	Canola	nucleus	43.58	57.14
Bra026917.1-P	Field mustard	nucleus	46.73	56.76
Bra019821.1-P	Field mustard	nucleus	46.73	56.6
CDY36099	Canola	nucleus	47.94	56.57
CDY24391	Canola	nucleus	46.25	56.51
CDX84999	Canola	nucleus	48.43	56.5
CDY16133	Canola	nucleus	48.67	56.15
KRH34761	Soybean	nucleus	47.7	56.13
AT1G13260.1	Thale cress	nucleus	46.49	55.81
AT3G25730.1	Thale cress	nucleus	44.79	55.56
AT1G68840.1	Thale cress	nucleus	47.22	55.4
CDX81561	Canola	nucleus	46.0	55.39
Bra011002.1-P	Field mustard	nucleus	47.94	55.15
Bra026509.1-P	Field mustard	nucleus	43.1	54.6
CDY45849	Canola	nucleus, plastid	46.25	54.57
Bra038346.1-P	Field mustard	nucleus, plastid	46.25	54.57
KRG92025	Soybean	nucleus	47.7	54.42
AT1G25560.1	Thale cress	nucleus	47.46	54.29
Bra024735.1-P	Field mustard	nucleus	48.43	53.76
VIT_01s0011g03070.t01	Wine grape	nucleus	48.91	53.44
CDX99755	Canola	nucleus	43.83	53.24
KRH75484	Soybean	nucleus	48.67	52.34
GSMUA_Achr6P01420_001	Banana	nucleus	39.71	51.9
CDX83547	Canola	nucleus	40.44	51.54
PGSC0003DMT400002125	Potato	nucleus	49.15	51.01
Solyc05g009790.1.1	Tomato	nucleus	48.67	50.89
KRH70603	Soybean	nucleus	49.39	50.87
EES02511	Sorghum	nucleus	44.07	46.91
OQU77426	Sorghum	nucleus	17.92	45.96
KXG19112	Sorghum	nucleus	18.64	37.56
KXG19111	Sorghum	nucleus	19.85	34.45
KXG27771	Sorghum	nucleus	22.28	33.58
EER92015	Sorghum	nucleus	22.28	33.58
EES13386	Sorghum	nucleus	19.37	31.62
OQU93364	Sorghum	nucleus	24.7	30.91
KXG22988	Sorghum	plastid	22.28	28.75
EES12712	Sorghum	nucleus	28.33	27.86
EES14747	Sorghum	plastid	17.92	26.52
EES07445	Sorghum	nucleus	27.84	26.5
KXG24821	Sorghum	nucleus	17.43	25.26

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EntrezGene:8063099	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	UniProt:C5XHG3	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES03472
ProteinID:EES03472	ProteinID:EES03472.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019
EnsemblPlantsGene:SORBI_3003G265200	SUPFAM:SSF101936	SUPFAM:SSF54171	unigene:Sbi.19461	UniParc:UPI0001A84B93	RefSeq:XP_002458352.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:60202751..60208436

Molecular Weight (calculated)

42486.8 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.181

Length

413 amino acids

Sequence
(BLAST)

001: MDSASSLVDD TSSGSGGGGG ASTDKLRALA VAAAASGPPL ERMGSGASAV LDAAEPGAEA DSAAAAAPGA VGVGGKLPSS RYKGVVPQPN GRWGAQIYER
101: HQRVWLGTFA GEADAARAYD VAAQRFRGRD AVTNFRPLAD ADPDAAAELR FLASRSKAEV VDMLRKHTYF DELAQNKRAF AAAAAAAASS AATTTASSLA
201: NNNNNHSSLA SPSPATAREH LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QLPSAGGESK GVLLNLEDAA GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK
301: GLQAGDVVGF YRSSAVGAGA DTKLFIDCKL RPNSVATAST TTGPAVGSSP PAPAPAPVAT KAVRLFGVDL LTAPAATAAA PAEAMAAGCK RARDLASPPQ
401: AAFKKQLVEL ALV

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.