Factsheet for TraesCS3A01G259900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G260100.1	Wheat	nucleus	93.6	93.85
TraesCS3B01G293000.1	Wheat	nucleus	93.07	91.12
HORVU3Hr1G064640.4	Barley	nucleus	88.53	87.37
HORVU3Hr1G064590.1	Barley	nucleus	43.2	83.51
Os01t0693400-01	Rice	nucleus	81.07	77.35
Zm00001d043782_P001	Maize	nucleus	79.47	76.61
EES03472	Sorghum	nucleus, plastid	80.27	72.88
Zm00001d011639_P001	Maize	nucleus	78.13	72.35
TraesCS1A01G372300.1	Wheat	nucleus	70.13	67.09
TraesCS1A01G372200.1	Wheat	nucleus	67.73	61.5
GSMUA_Achr1P21250_001	Banana	nucleus	47.47	60.54
CDX97996	Canola	nucleus	49.87	57.54
CDY61361	Canola	nucleus	49.6	56.88
CDY36099	Canola	nucleus	53.07	56.86
CDY40973	Canola	nucleus	47.73	56.83
CDY24391	Canola	nucleus	51.2	56.8
CDX84999	Canola	nucleus	53.33	56.5
CDY72302	Canola	nucleus	49.07	56.44
CDY58354	Canola	nucleus	48.8	56.13
TraesCS1A01G372100.1	Wheat	nucleus	66.13	56.11
CDY16133	Canola	nucleus	53.33	55.87
KRH34761	Soybean	nucleus	52.0	55.56
Bra011002.1-P	Field mustard	nucleus	52.8	55.15
Bra019821.1-P	Field mustard	nucleus	50.13	55.13
AT1G68840.1	Thale cress	nucleus	51.73	55.11
CDX81561	Canola	nucleus	50.4	55.1
Bra026917.1-P	Field mustard	nucleus	49.6	54.71
AT3G25730.1	Thale cress	nucleus	48.53	54.65
AT1G13260.1	Thale cress	nucleus	49.87	54.36
Bra026509.1-P	Field mustard	nucleus	47.2	54.29
CDY45849	Canola	nucleus, plastid	50.67	54.29
Bra038346.1-P	Field mustard	nucleus, plastid	50.67	54.29
KRG92025	Soybean	nucleus	52.27	54.14
Bra024735.1-P	Field mustard	nucleus	53.07	53.49
AT1G25560.1	Thale cress	nucleus	51.2	53.19
CDX99755	Canola	nucleus	48.0	52.94
VIT_01s0011g03070.t01	Wine grape	nucleus	53.33	52.91
GSMUA_Achr6P01420_001	Banana	nucleus	43.73	51.9
TraesCS3A01G053900.1	Wheat	nucleus	44.27	51.88
KRH75484	Soybean	nucleus	52.27	51.04
CDX83547	Canola	nucleus	44.0	50.93
TraesCS3A01G054000.1	Wheat	nucleus	47.73	50.28
PGSC0003DMT400002125	Potato	nucleus	53.33	50.25
Solyc05g009790.1.1	Tomato	nucleus	52.8	50.13
KRH70603	Soybean	nucleus	53.07	49.63
TraesCS5A01G497900.1	Wheat	nucleus	45.87	46.74
TraesCS7A01G020800.1	Wheat	nucleus	22.13	41.92
TraesCS7A01G461000.1	Wheat	nucleus	21.33	41.03
TraesCS4A01G472700.1	Wheat	nucleus	23.2	40.09
TraesCS7A01G020700.1	Wheat	nucleus	22.4	39.07
TraesCS2A01G460700.1	Wheat	nucleus	24.8	34.96
TraesCS5A01G127100.1	Wheat	nucleus	24.8	34.96
TraesCS4A01G198300.2	Wheat	nucleus	25.07	33.69
TraesCS1A01G200500.1	Wheat	nucleus	24.27	32.73
TraesCS5A01G516600.1	Wheat	nucleus	26.93	31.86
TraesCS2A01G394700.1	Wheat	nucleus	29.6	27.48
TraesCS6A01G259600.1	Wheat	nucleus	29.6	26.81

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3A01G259900	EnsemblPlants:TraesCS3A01G259900.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:482183259..482184743

Molecular Weight (calculated)

39405.4 Da

IEP (calculated)

9.886

GRAVY (calculated)

-0.309

Length

375 amino acids

Sequence
(BLAST)

001: MDSTSCLADD TSSGGAASTD KLKALAAAAA AAAAGPLERM GSGASAVLDA AEPGSEADSG GRAAPAGKLP SSRFKGVVPQ PNGRWGAQIY ERHQRVWLGT
101: FAGEADAARA YDVAAQRFRG RDAVTNFRPL ADADPDAAAE LRFLAARSKA EVVDMLRKHT YFDELAQSKR AFAASAALSA PTTSHGHASP PTPAAAREHL
201: FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPAAGGESKG LLLNFEDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LGAGDVVGFY RAAAGSTGEA
301: SKLFIDCKQR PSTNSPAPAD PVDQSPAPVH KAVRIFGVDL LTAPASPGCK RARDMVKPPA PTAALKKQCI ELALA

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.