Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G240600.1 | Wheat | nucleus | 97.83 | 97.83 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 96.38 | 97.56 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 94.69 | 95.84 |
| Os02t0683500-01 | Rice | nucleus | 78.02 | 78.4 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 65.46 | 67.08 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 32.13 | 53.41 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 31.64 | 52.4 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 39.61 | 51.73 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 33.57 | 50.0 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 25.36 | 49.76 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 23.43 | 48.99 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 38.89 | 48.79 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 22.95 | 48.72 |
| CDY67348 | Canola | nucleus | 17.15 | 47.33 |
| CDX80053 | Canola | nucleus | 33.57 | 46.8 |
| Bra004501.1-P | Field mustard | nucleus | 33.57 | 46.8 |
| CDY41564 | Canola | nucleus | 33.09 | 46.13 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 23.91 | 46.05 |
| Bra040478.1-P | Field mustard | nucleus | 32.37 | 45.73 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 23.91 | 45.62 |
| Solyc08g013700.1.1 | Tomato | nucleus | 32.13 | 45.24 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.71 | 45.22 |
| Solyc08g013690.1.1 | Tomato | nucleus | 35.02 | 44.75 |
| CDY48008 | Canola | nucleus | 32.85 | 44.74 |
| PGSC0003DMT400015011 | Potato | nucleus | 33.82 | 44.73 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 25.36 | 44.68 |
| PGSC0003DMT400015010 | Potato | nucleus | 32.13 | 44.33 |
| CDY27515 | Canola | nucleus | 32.37 | 44.08 |
| CDY50908 | Canola | nucleus | 33.09 | 43.49 |
| CDY69432 | Canola | nucleus | 28.74 | 42.81 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 31.4 | 42.76 |
| Bra003482.1-P | Field mustard | nucleus | 29.47 | 42.66 |
| Bra000434.1-P | Field mustard | nucleus | 31.88 | 42.58 |
| Solyc08g083400.2.1 | Tomato | nucleus | 34.3 | 42.52 |
| CDX67872 | Canola | nucleus | 29.23 | 42.46 |
| AT2G46870.1 | Thale cress | nucleus | 31.64 | 42.26 |
| CDX83351 | Canola | nucleus | 31.4 | 42.21 |
| CDY43060 | Canola | cytosol | 16.43 | 41.72 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 28.74 | 41.61 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 28.74 | 41.32 |
| AT3G61970.1 | Thale cress | nucleus | 29.23 | 40.47 |
| CDX76605 | Canola | nucleus | 28.5 | 40.41 |
| Bra007646.1-P | Field mustard | nucleus | 28.5 | 40.41 |
| CDY11388 | Canola | nucleus | 28.5 | 40.41 |
| CDY58763 | Canola | nucleus | 30.92 | 40.25 |
| CDY58764 | Canola | nucleus | 30.92 | 40.0 |
| Bra014415.1-P | Field mustard | nucleus | 30.92 | 40.0 |
| CDX90001 | Canola | nucleus | 31.88 | 38.37 |
| KRG97268 | Soybean | nucleus | 38.16 | 38.26 |
| KRH68988 | Soybean | nucleus | 38.65 | 38.1 |
| CDY15208 | Canola | nucleus | 29.47 | 37.89 |
| Bra033294.1-P | Field mustard | nucleus | 31.4 | 37.79 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 24.15 | 37.59 |
| PGSC0003DMT400031863 | Potato | nucleus | 36.72 | 37.44 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 23.67 | 36.84 |
| AT1G01030.1 | Thale cress | nucleus | 31.64 | 36.59 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 24.4 | 36.2 |
| Bra030497.1-P | Field mustard | nucleus | 30.92 | 36.16 |
| KRH47753 | Soybean | nucleus | 43.48 | 36.0 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 28.74 | 35.31 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 36.72 | 32.97 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 35.99 | 32.68 |
| KRH06334 | Soybean | nucleus | 44.2 | 31.44 |
| AT4G01500.1 | Thale cress | nucleus | 23.91 | 29.73 |
| TraesCS3A01G053900.1 | Wheat | nucleus | 22.95 | 29.69 |
| TraesCS3A01G259900.1 | Wheat | nucleus | 26.81 | 29.6 |
| TraesCS1A01G372300.1 | Wheat | nucleus | 27.29 | 28.83 |
| CDX97251 | Canola | nucleus | 23.19 | 28.32 |
| Bra008552.1-P | Field mustard | nucleus | 22.95 | 28.11 |
| TraesCS3A01G054000.1 | Wheat | nucleus | 23.67 | 27.53 |
| TraesCS5A01G497900.1 | Wheat | nucleus | 23.43 | 26.36 |
| TraesCS1A01G372200.1 | Wheat | nucleus | 26.09 | 26.15 |
| CDY07140 | Canola | nucleus | 19.32 | 26.14 |
| Bra037417.1-P | Field mustard | nucleus | 19.32 | 25.81 |
| CDY49614 | Canola | nucleus | 19.32 | 25.81 |
| TraesCS1A01G372100.1 | Wheat | nucleus | 26.33 | 24.66 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G259600.1 | EnsemblPlantsGene:TraesCS6A01G259600 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF39 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:482619222..482620930
Molecular Weight (calculated)
44295.9 Da
IEP (calculated)
8.722
GRAVY (calculated)
-0.479
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTATSSRF SKGEEEVEEE QEEASMPREI PFMTAAVATS AAAPSASASA STPASAAVSA SPAGSSPPFR SGDDAGASGS GGGGGGVAEA VEKEHMFDKV
101: VTPSDVGKLN RLVIPKQYAE KYFPLDSAAN EKGLLLNFED SAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFSRGAGEAA RHRLFIDWKR
201: RADTRDPLRL PRLPLPMPLT SHYSPWGLGA GGRGFFMPPS PPATLYEHRL RQGFDFRGMN PSYPTMGRQV ILFGSAARMP PHTPAPLLVP RPPPPLHFTV
301: QQQGSGAGVS VTAGSPVVLD SVPVIESPTT ATKKRVRLFG VNLDNPQHPG DGGDESSNYG SALPLQMPAS AWRPRDHTLR LLEFPSHGAG AEASSPSSSS
401: SSKREAHSGL DLDL
101: VTPSDVGKLN RLVIPKQYAE KYFPLDSAAN EKGLLLNFED SAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFSRGAGEAA RHRLFIDWKR
201: RADTRDPLRL PRLPLPMPLT SHYSPWGLGA GGRGFFMPPS PPATLYEHRL RQGFDFRGMN PSYPTMGRQV ILFGSAARMP PHTPAPLLVP RPPPPLHFTV
301: QQQGSGAGVS VTAGSPVVLD SVPVIESPTT ATKKRVRLFG VNLDNPQHPG DGGDESSNYG SALPLQMPAS AWRPRDHTLR LLEFPSHGAG AEASSPSSSS
401: SSKREAHSGL DLDL
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.