Factsheet for Bra008552.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97251	Canola	nucleus	99.7	99.41
Bra037417.1-P	Field mustard	nucleus	65.38	71.29
AT4G01500.1	Thale cress	nucleus	69.82	70.87
Zm00001d035982_P001	Maize	nucleus	14.2	54.55
Os06t0107800-02	Rice	nucleus	23.08	39.2
HORVU0Hr1G022200.1	Barley	nucleus	23.08	39.0
TraesCS7A01G461000.1	Wheat	nucleus	22.49	38.97
TraesCS7A01G020800.1	Wheat	nucleus	22.78	38.89
TraesCS7D01G448900.1	Wheat	nucleus	22.49	38.78
TraesCS7B01G362500.1	Wheat	nucleus	22.49	38.78
TraesCS4A01G472700.1	Wheat	nucleus	23.37	36.41
TraesCS7A01G020700.1	Wheat	nucleus	23.08	36.28
TraesCS7D01G017000.1	Wheat	nucleus	23.08	35.94
HORVU7Hr1G002230.1	Barley	nucleus	23.37	35.91
Zm00001d048815_P001	Maize	nucleus	24.26	35.34
KXG19112	Sorghum	nucleus	21.3	35.12
Zm00001d010077_P001	Maize	nucleus	26.33	34.36
EES13386	Sorghum	nucleus	25.44	33.99
Zm00001d024545_P001	Maize	nucleus	24.85	33.73
Zm00001d035903_P001	Maize	nucleus	22.19	33.48
Bra003482.1-P	Field mustard	nucleus	28.11	33.22
TraesCS1B01G215000.1	Wheat	nucleus	26.92	33.09
Zm00001d024103_P001	Maize	nucleus	21.89	33.04
GSMUA_Achr4P30170_001	Banana	nucleus	24.26	32.93
Bra007646.1-P	Field mustard	nucleus	28.4	32.88
GSMUA_Achr4P26430_001	Banana	nucleus	24.26	32.8
Bra040478.1-P	Field mustard	nucleus	28.4	32.76
Bra004501.1-P	Field mustard	nucleus	28.7	32.66
Bra017262.1-P	Field mustard	nucleus	23.67	32.65
TraesCS1A01G200500.1	Wheat	nucleus	26.33	32.01
KXG19111	Sorghum	nucleus	22.49	31.93
Bra005301.1-P	Field mustard	nucleus	23.37	31.85
Zm00001d029749_P001	Maize	nucleus	25.44	31.5
HORVU1Hr1G051780.2	Barley	nucleus	27.22	31.4
Bra034828.1-P	Field mustard	nucleus	23.96	31.4
EER92015	Sorghum	nucleus	25.44	31.39
Bra001411.1-P	Field mustard	nucleus	21.89	31.36
Bra000434.1-P	Field mustard	nucleus	28.7	31.29
TraesCS1D01G203900.1	Wheat	nucleus	26.92	31.27
HORVU7Hr1G046950.1	Barley	nucleus	24.85	30.66
GSMUA_Achr7P04630_001	Banana	nucleus	18.64	30.58
Os03t0120900-01	Rice	nucleus	28.11	30.55
GSMUA_Achr5P12850_001	Banana	nucleus	18.93	30.33
Zm00001d047359_P001	Maize	nucleus	24.85	30.32
TraesCS4B01G348500.1	Wheat	nucleus	28.11	29.78
Bra014415.1-P	Field mustard	nucleus	28.11	29.69
TraesCS5A01G516600.1	Wheat	nucleus	27.81	29.65
Bra033294.1-P	Field mustard	nucleus	30.18	29.65
Bra041023.1-P	Field mustard	nucleus	23.08	29.55
OQU93364	Sorghum	nucleus	28.7	29.39
Os04t0581400-01	Rice	nucleus	25.44	29.35
Bra005886.1-P	Field mustard	nucleus	23.08	29.21
Bra030497.1-P	Field mustard	nucleus	30.47	29.1
Zm00001d027409_P001	Maize	nucleus	28.11	29.05
GSMUA_Achr4P12210_001	Banana	nucleus	18.93	28.57
Os08t0157700-00	Rice	nucleus	24.26	28.57
GSMUA_Achr5P20340_001	Banana	nucleus	28.4	28.49
GSMUA_AchrUn_...	Banana	cytosol	20.12	28.22
Os10t0537100-00	Rice	nucleus	25.74	27.88
HORVU4Hr1G084950.3	Barley	nucleus	28.11	27.86
GSMUA_Achr1P03600_001	Banana	nucleus	26.92	27.58
GSMUA_Achr4P24970_001	Banana	nucleus	18.34	26.38
Bra019821.1-P	Field mustard	nucleus	26.33	26.1
Bra038346.1-P	Field mustard	nucleus, plastid	26.63	25.71
Bra026917.1-P	Field mustard	nucleus	25.74	25.59
Bra026509.1-P	Field mustard	nucleus	24.26	25.15
GSMUA_Achr2P10230_001	Banana	nucleus	21.3	23.68
GSMUA_Achr5P10220_001	Banana	nucleus	18.93	23.53
TraesCS2A01G394700.1	Wheat	nucleus	28.11	23.51
Zm00001d026005_P001	Maize	nucleus	28.11	23.51
Zm00001d002562_P001	Maize	nucleus	28.4	23.47
TraesCS6B01G286900.1	Wheat	nucleus	28.4	23.47
Bra011002.1-P	Field mustard	nucleus	24.85	23.4
GSMUA_Achr2P00400_001	Banana	nucleus	19.82	23.26
HORVU6Hr1G066190.2	Barley	nucleus	28.11	23.23
TraesCS2B01G412700.1	Wheat	nucleus	28.11	23.23
TraesCS2D01G392400.1	Wheat	nucleus	28.11	23.23
GSMUA_Achr9P18780_001	Banana	nucleus	19.53	23.08
Os02t0683500-01	Rice	nucleus	28.11	23.06
TraesCS6D01G240600.1	Wheat	nucleus	28.11	22.95
TraesCS6A01G259600.1	Wheat	nucleus	28.11	22.95
EES12712	Sorghum	nucleus	28.4	22.86
Bra024735.1-P	Field mustard	nucleus	24.85	22.58
Zm00001d017618_P001	Maize	nucleus	27.51	22.04
Zm00001d051471_P001	Maize	nucleus	26.92	21.67
EES07445	Sorghum	nucleus	27.81	21.66
Bra009171.1-P	Field mustard	nucleus	14.2	20.08
Bra030458.1-P	Field mustard	nucleus	17.75	18.99
Bra030476.1-P	Field mustard	nucleus	17.46	18.15
Bra018894.1-P	Field mustard	nucleus	17.75	17.75
Bra018868.1-P	Field mustard	nucleus	17.75	17.75
Bra014282.1-P	Field mustard	nucleus	17.16	17.11
Bra018854.1-P	Field mustard	nucleus	16.86	16.76
Bra018869.1-P	Field mustard	nucleus	16.27	16.47

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra008552	EnsemblPlants:Bra008552.1	EnsemblPlants:Bra008552.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CWF5	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF4	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000254701C	SEG:seg	:	:	:

Description

AT4G01500 (E=7e-114) NGA4 | NGA4 (NGATHA4); transcription factor

Coordinates

chrA02:+:16504646..16505662

Molecular Weight (calculated)

38455.6 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.902

Length

338 amino acids

Sequence
(BLAST)

001: MSTRASTHQE PAENGASGSD NNNNNFNSAM REPMFQKVLT PSDVGKLNRL VIPKQHAENY FPLEDNQTGT LLDFQDKNGK MWRFRYSYWK SSQSYVMTKG
101: WSRFVKEKKL NNGDTVSFHR GYVPDDNEPE QRRNILFIDW RNRPDTNLLH NINHHHYPIL GPPPYPTASY YPVTEYSMPH YGRFPSLYHN QFLGYGYGPY
201: GKTVTGGRYY AGSPLDHHHR WNLGRSEPFF YDSCPVFPTT RLTSSLAMLP SSPPSQPPQE GTAKKLRLFG FDVEESSSSG EARAEMGVAG HSSSSPVVIR
301: DNESSWRSPR GEMGGLSSSV VNLSDDEDYK RKGKSLEF

Best Arabidopsis Sequence Match ( AT4G01500.1 )
(BLAST)

001: MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL

Arabidopsis Description

NGA4NGA4 [Source:UniProtKB/TrEMBL;Acc:A0A178V2Z9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.