Factsheet for Bra005301.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75073	Canola	nucleus	99.19	99.19
CDX84162	Canola	nucleus	90.73	92.59
AT2G36080.1	Thale cress	nucleus	87.5	88.93
Bra017262.1-P	Field mustard	nucleus	87.5	88.57
Bra034828.1-P	Field mustard	nucleus	53.23	51.16
Bra001411.1-P	Field mustard	nucleus	47.58	50.0
Bra041023.1-P	Field mustard	nucleus	51.61	48.48
GSMUA_Achr3P19210_001	Banana	nucleus	37.5	46.27
GSMUA_Achr9P02600_001	Banana	nucleus	35.89	46.11
Bra005886.1-P	Field mustard	nucleus	49.6	46.07
TraesCS5B01G126200.1	Wheat	nucleus	46.37	43.4
TraesCS5D01G134700.1	Wheat	nucleus	46.37	43.23
TraesCS5A01G127100.1	Wheat	nucleus	46.37	43.23
GSMUA_Achr6P13140_001	Banana	nucleus	42.74	42.91
Os11t0156000-01	Rice	nucleus	47.58	42.29
GSMUA_Achr6P35600_001	Banana	nucleus	40.73	41.74
TraesCS2B01G482400.1	Wheat	nucleus	44.35	41.2
TraesCS2D01G460900.1	Wheat	nucleus	44.35	41.2
TraesCS2A01G460700.1	Wheat	nucleus	43.95	40.98
KRH67965	Soybean	nucleus	47.58	40.97
KXG27771	Sorghum	nucleus	45.16	40.88
Bra009171.1-P	Field mustard	nucleus	39.11	40.59
TraesCS4A01G198300.2	Wheat	nucleus	44.76	39.78
VIT_08s0007g02810.t01	Wine grape	nucleus	45.56	39.65
KRG96220	Soybean	nucleus	47.58	39.46
TraesCS4B01G117100.1	Wheat	nucleus	44.35	39.43
TraesCS4D01G114900.1	Wheat	nucleus	44.35	39.01
Zm00001d023446_P001	Maize	nucleus	43.95	38.52
GSMUA_Achr11P...	Banana	nucleus	28.63	38.38
KRH32791	Soybean	nucleus	51.61	37.98
GSMUA_Achr9P08980_001	Banana	nucleus	24.6	37.65
HORVU4Hr1G021650.22	Barley	nucleus	42.34	37.63
HORVU5Hr1G040620.4	Barley	nucleus	41.13	37.23
KRH72242	Soybean	nucleus	50.4	36.34
Zm00001d052591_P001	Maize	nucleus	44.76	36.16
KXG22988	Sorghum	plastid	45.16	35.0
Solyc09g010230.1.1	Tomato	nucleus	47.98	34.49
PGSC0003DMT400023077	Potato	nucleus	44.76	33.13
Bra040478.1-P	Field mustard	nucleus	37.5	31.74
Bra003482.1-P	Field mustard	nucleus	36.29	31.47
Bra004501.1-P	Field mustard	nucleus	37.1	30.98
Bra000434.1-P	Field mustard	nucleus	37.5	30.0
Bra007646.1-P	Field mustard	nucleus	34.68	29.45
Bra014415.1-P	Field mustard	nucleus	35.89	27.81
Os12t0157000-01	Rice	cytosol, nucleus	22.58	26.67
Bra033294.1-P	Field mustard	nucleus	35.89	25.87
Bra019821.1-P	Field mustard	nucleus	35.48	25.81
Bra030497.1-P	Field mustard	nucleus	36.69	25.71
Bra026917.1-P	Field mustard	nucleus	35.08	25.59
Bra038346.1-P	Field mustard	nucleus, plastid	34.68	24.57
Bra026509.1-P	Field mustard	nucleus	32.26	24.54
Bra008552.1-P	Field mustard	nucleus	31.85	23.37
Bra037417.1-P	Field mustard	nucleus	29.03	23.23
Bra011002.1-P	Field mustard	nucleus	33.47	23.12
Bra024735.1-P	Field mustard	nucleus	33.47	22.31
GSMUA_Achr6P18320_001	Banana	nucleus	29.84	21.76
Bra030476.1-P	Field mustard	nucleus	25.81	19.69
Bra030458.1-P	Field mustard	nucleus	24.19	18.99
Bra018868.1-P	Field mustard	nucleus	25.4	18.64
Bra018869.1-P	Field mustard	nucleus	23.79	17.66
Bra018854.1-P	Field mustard	nucleus	24.19	17.65
Bra014282.1-P	Field mustard	nucleus	23.79	17.4
Bra018894.1-P	Field mustard	nucleus	23.39	17.16

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra005301	EnsemblPlants:Bra005301.1	EnsemblPlants:Bra005301.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CM64	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002547C78	SEG:seg	:	:	:

Description

AT2G36080 (E=1e-091) | DNA-binding protein, putative

Coordinates

chrA05:+:4643803..4646678

Molecular Weight (calculated)

28738.3 Da

IEP (calculated)

7.261

GRAVY (calculated)

-0.877

Length

248 amino acids

Sequence
(BLAST)

001: MSINQYSSDF NYHSLMWQQQ QHRHHHHQND VAEEKEALFE KPLTPSDVGK LNRLVIPKQH AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS
101: SQSYVLTKGW SRYVKEKQLD AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSN ASLQYYPHAG VQAVESQRGN SKTLRLFGVN MECQLDSDLP
201: DPSTPDGSTI CPTSHDQFHL YPQQHYPPPY YMDISFTGDV HQTRSPQG

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.