Factsheet for PGSC0003DMT400023077

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010230.1.1	Tomato	nucleus	81.19	78.84
PGSC0003DMT400072354	Potato	nucleus	55.82	64.93
VIT_08s0007g02810.t01	Wine grape	nucleus	45.37	53.33
AT2G36080.1	Thale cress	nucleus	34.63	47.54
CDY43751	Canola	nucleus	34.33	47.33
CDX73868	Canola	nucleus	33.13	47.03
Bra001411.1-P	Field mustard	nucleus	33.13	47.03
GSMUA_Achr9P02600_001	Banana	nucleus	26.87	46.63
Bra017262.1-P	Field mustard	nucleus	34.03	46.53
CDY08512	Canola	nucleus	34.33	46.37
CDY01036	Canola	nucleus	35.22	45.91
Bra034828.1-P	Field mustard	nucleus	34.93	45.35
GSMUA_Achr3P19210_001	Banana	nucleus	27.16	45.27
CDX84162	Canola	nucleus	32.84	45.27
CDX75073	Canola	nucleus	33.43	45.16
Bra005301.1-P	Field mustard	nucleus	33.13	44.76
GSMUA_Achr6P13140_001	Banana	nucleus	31.94	43.32
Bra041023.1-P	Field mustard	nucleus	33.73	42.8
CDY47260	Canola	nucleus	34.03	42.7
Bra005886.1-P	Field mustard	nucleus	34.03	42.7
GSMUA_Achr6P35600_001	Banana	nucleus	30.75	42.56
TraesCS5D01G134700.1	Wheat	nucleus	33.73	42.48
TraesCS5B01G126200.1	Wheat	nucleus	33.43	42.26
TraesCS5A01G127100.1	Wheat	nucleus	33.43	42.11
AT5G06250.4	Thale cress	nucleus	35.52	41.9
GSMUA_Achr9P08980_001	Banana	nucleus	20.0	41.36
KRH67965	Soybean	nucleus	35.52	41.32
KXG27771	Sorghum	nucleus	33.43	40.88
TraesCS2B01G482400.1	Wheat	nucleus	32.24	40.45
TraesCS2A01G460700.1	Wheat	nucleus	31.94	40.23
TraesCS2D01G460900.1	Wheat	nucleus	31.64	39.7
KRH72242	Soybean	nucleus	40.6	39.53
KRH32791	Soybean	nucleus	39.7	39.47
Zm00001d023446_P001	Maize	nucleus	33.13	39.22
KRG96220	Soybean	nucleus	34.93	39.13
CDY62470	Canola	nucleus	26.57	39.04
GSMUA_Achr11P...	Banana	nucleus	21.19	38.38
HORVU5Hr1G040620.4	Barley	nucleus	31.34	38.32
Os11t0156000-01	Rice	nucleus	31.64	37.99
TraesCS4B01G117100.1	Wheat	nucleus	31.64	37.99
TraesCS4A01G198300.2	Wheat	nucleus	31.34	37.63
TraesCS4D01G114900.1	Wheat	nucleus	31.64	37.59
CDX80996	Canola	nucleus	29.85	36.36
HORVU4Hr1G021650.22	Barley	nucleus	29.85	35.84
KXG22988	Sorghum	plastid	33.73	35.31
Zm00001d052591_P001	Maize	nucleus	31.94	34.85
Bra009171.1-P	Field mustard	nucleus	23.58	33.05
CDY70080	Canola	nucleus	23.28	32.64
CDX98911	Canola	nucleus	23.28	32.64
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	36.12	32.61
PGSC0003DMT400015011	Potato	nucleus	28.66	30.67
PGSC0003DMT400015010	Potato	nucleus	27.46	30.67
PGSC0003DMT400085602	Potato	nucleus	11.64	30.47
PGSC0003DMT400092316	Potato	nucleus	10.75	27.07
Os12t0157000-01	Rice	cytosol, nucleus	16.72	26.67
PGSC0003DMT400031863	Potato	nucleus	31.34	25.86
PGSC0003DMT400019296	Potato	nucleus	25.97	23.45
PGSC0003DMT400002125	Potato	nucleus	27.46	23.12
GSMUA_Achr6P18320_001	Banana	nucleus	22.69	22.35
PGSC0003DMT400040900	Potato	nucleus	5.97	13.07

Protein Annotations

EntrezGene:102586434	MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1AHQ9	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400008936	PGSC:PGSC0003DMG400008936	EnsemblPlants:PGSC0003DMT400023077	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000296C965	SEG:seg	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008936]

Coordinates

chr9:-:2311042..2313815

Molecular Weight (calculated)

37224.5 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.895

Length

335 amino acids

Sequence
(BLAST)

001: MSNNTHNEHD DELGQSEDKL EEIPRDHLFE KPLTPSDVGK LNRLVIPKQH AEKYFPLSGN NNNNTNNNDG GTEKGLLLSF EDESGKSWRF RYSYWNSSQS
101: YVLTKGWSRF VKEKRLDAGD IVLFDRHRSE SDRLFIGWRR RNTVSASTSI STPAAVHNTA AAAVTRNMGG GGGGGGWAHV YYGGHPYPSA GAGLLYQPDC
201: LHAGGGAMPN QTTSVNNNTR RHVRLFGVNL ECEADDSSWS EPPPTPDGGG SSTSSHNQDH GRSQDQASQH YYQYQFQYSK PHVTVSAAAS SYNNNHHNHK
301: STLVVTTKNQ VLLYHQTKLF AIQEYLEITP NTSKT

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.