Factsheet for PGSC0003DMT400072354

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083210.1.1	Tomato	nucleus	97.92	91.56
PGSC0003DMT400023077	Potato	nucleus	64.93	55.82
GSMUA_Achr3P19210_001	Banana	nucleus	32.29	46.27
GSMUA_Achr9P02600_001	Banana	nucleus	30.9	46.11
GSMUA_Achr6P13140_001	Banana	nucleus	36.11	42.11
GSMUA_Achr6P35600_001	Banana	nucleus	34.72	41.32
TraesCS5D01G134700.1	Wheat	nucleus	37.5	40.6
TraesCS5B01G126200.1	Wheat	nucleus	37.15	40.38
TraesCS5A01G127100.1	Wheat	nucleus	37.15	40.23
KXG27771	Sorghum	nucleus	37.15	39.05
GSMUA_Achr11P...	Banana	nucleus	25.0	38.92
TraesCS2B01G482400.1	Wheat	nucleus	35.76	38.58
TraesCS4B01G117100.1	Wheat	nucleus	37.15	38.35
TraesCS4A01G198300.2	Wheat	nucleus	37.15	38.35
TraesCS2A01G460700.1	Wheat	nucleus	35.42	38.35
GSMUA_Achr9P08980_001	Banana	nucleus	21.53	38.27
TraesCS4D01G114900.1	Wheat	nucleus	37.15	37.94
TraesCS2D01G460900.1	Wheat	nucleus	35.07	37.83
Os11t0156000-01	Rice	nucleus	35.42	36.56
HORVU5Hr1G040620.4	Barley	nucleus	34.38	36.13
Zm00001d023446_P001	Maize	nucleus	35.07	35.69
HORVU4Hr1G021650.22	Barley	nucleus	34.03	35.13
Zm00001d052591_P001	Maize	nucleus	34.38	32.25
KXG22988	Sorghum	plastid	35.42	31.88
PGSC0003DMT400085602	Potato	nucleus	13.89	31.25
PGSC0003DMT400015010	Potato	nucleus	31.25	30.0
PGSC0003DMT400015011	Potato	nucleus	31.94	29.39
PGSC0003DMT400031863	Potato	nucleus	34.38	24.38
Os12t0157000-01	Rice	cytosol, nucleus	17.71	24.29
PGSC0003DMT400092316	Potato	nucleus	10.76	23.31
PGSC0003DMT400019296	Potato	nucleus	28.82	22.37
PGSC0003DMT400002125	Potato	nucleus	29.86	21.61
GSMUA_Achr6P18320_001	Banana	nucleus	24.65	20.88
PGSC0003DMT400040900	Potato	nucleus	6.25	11.76

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1CQ49	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400028159
PGSC:PGSC0003DMG400028159	EnsemblPlants:PGSC0003DMT400072354	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000295F704	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028159]

Coordinates

chr10:-:55899618..55904610

Molecular Weight (calculated)

32650.3 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.992

Length

288 amino acids

Sequence
(BLAST)

001: MEESSRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG
101: WSRFVKEKKL DAGDVVLFER HRVDGDRQFI GWRRKNGDAV AAAAATTVAP PGGGGGWGQV HPFPSAGVPY QTDFLHAGRG VMHNQLTTPN GNNTRRQVRL
201: FGVNLECEVD DSSSWSESST PDGSISSNHH QQSQEYYQSQ AGQHYYQYQV HYSNPHATPP ASSYNNNHHY NTDMDHSRDV NQMRYHQG

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.