Factsheet for PGSC0003DMT400019296

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007000.1.1	Tomato	nucleus	90.57	90.32
VIT_14s0083g00130.t01	Wine grape	nucleus	45.82	59.86
PGSC0003DMT400002125	Potato	nucleus	62.53	58.29
PGSC0003DMT400015010	Potato	nucleus	25.07	31.0
PGSC0003DMT400085602	Potato	nucleus	10.24	29.69
PGSC0003DMT400015011	Potato	nucleus	24.8	29.39
PGSC0003DMT400072354	Potato	nucleus	22.37	28.82
PGSC0003DMT400023077	Potato	nucleus	23.45	25.97
PGSC0003DMT400092316	Potato	nucleus	8.89	24.81
PGSC0003DMT400031863	Potato	nucleus	25.88	23.65
PGSC0003DMT400040900	Potato	nucleus	7.01	16.99

Protein Annotations

EntrezGene:102588131	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
UniProt:M1ABV4	PFAM:PF00847	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400007458	PGSC:PGSC0003DMG400007458	EnsemblPlants:PGSC0003DMT400019296
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0002950E14	RefSeq:XP_006366067.1	:	:

Description

RAV [Source:PGSC_GENE;Acc:PGSC0003DMG400007458]

Coordinates

chr4:+:744695..746149

Molecular Weight (calculated)

42282.2 Da

IEP (calculated)

9.502

GRAVY (calculated)

-0.582

Length

371 amino acids

Sequence
(BLAST)

001: MEVSCIDQEI STTSDSPSTI FPAERPRQMG SGVSVILDAD STNGVEAESK NNTSNNNKLP SSKFKGVVPQ PNGRWGAQIY EKHQRIWLGT FNGEEEAAKA
101: YDIAAQRFRG RDAVTNFKPL FDKYCQTEEI EISFLNSRSK VEIVDMLRKH TYNDELEHAK KVYNINNFEK NGRRTCHTND IATFSLDANE KVANIARELL
201: FEKAVTPSDV GKLNRLVIPK QHAERYFPLV AKVNGNGNTS NGELLNFEDM NGKMWRFRYS YWNSSQSYVL TKGWSRYVKE NKLKAGDIVS FKRSFGVGVE
301: DKQLFIDSKT RIIRSEQVKV VRLFGVNICK VQDVSNNVVV EKNMSVGKRM REMELLAFEC SKKQRVIIDA L

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.