Factsheet for VIT_14s0083g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g03070.t01	Wine grape	nucleus	68.66	51.59
PGSC0003DMT400019296	Potato	nucleus	59.86	45.82
Solyc04g007000.1.1	Tomato	nucleus	58.1	44.35
VIT_08s0007g02810.t01	Wine grape	nucleus	29.23	29.12
VIT_11s0037g00010.t01	Wine grape	nucleus	34.86	27.73
VIT_02s0025g03000.t01	Wine grape	nucleus	36.27	22.59
VIT_15s0048g02370.t01	Wine grape	nucleus	35.92	22.13

Protein Annotations

EntrezGene:100251473	wikigene:100251473	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10
EMBL:AM460100	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	ProteinID:CAN61373	ProteinID:CAN61373.1
ProteinID:CCB44042	ProteinID:CCB44042.1	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GVQ7	EMBL:FN594955
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	EntrezGene:LOC100251473	wikigene:LOC100251473	PFAM:PF00847	PFAM:PF02362
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0001984BAA	ArrayExpress:VIT_14s0083g00130	EnsemblPlantsGene:VIT_14s0083g00130	EnsemblPlants:VIT_14s0083g00130.t01
RefSeq:XP_002279732	RefSeq:XP_002279732.1	:	:	:	:

Description

No Description!

Coordinates

chr14:-:22050931..22051785

Molecular Weight (calculated)

32157.0 Da

IEP (calculated)

10.208

GRAVY (calculated)

-0.686

Length

284 amino acids

Sequence
(BLAST)

001: MSDYSWRVGG TSGISDSENG VGAVYLRKLT SSKYKGVVPQ PNGRWGAQIY EKHRRIWLGT FNEEGEAAKA YDVAARRFRG HAALTNFMVS GKGIQDDIET
101: TFLNSHSKAE IVDMLRKHTY NDELEQSAHN YGSKESGADV MESKPSVCER VQLFDKAVTP SDVGKLNRMV IPKQHAEKHL PLQLASSSKG GLLNFEDNGG
201: KIWRFRYSFW NSSQSYVLTK GWRRFVKEKN LKAGDIVSFH RSTGSDKRLF IEWEQRDSSR KPSMKQVESG QMVRLFGVNL FSKS

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.