Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035982_P001 | Maize | nucleus | 12.94 | 67.05 |
| PGSC0003DMT400015010 | Potato | nucleus | 33.99 | 51.67 |
| Solyc08g013700.1.1 | Tomato | nucleus | 33.11 | 51.36 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 27.85 | 50.8 |
| PGSC0003DMT400015011 | Potato | nucleus | 34.21 | 49.84 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 27.19 | 49.8 |
| Solyc08g013690.1.1 | Tomato | nucleus | 34.43 | 48.46 |
| Bra040478.1-P | Field mustard | nucleus | 30.7 | 47.78 |
| Solyc08g083400.2.1 | Tomato | nucleus | 34.65 | 47.31 |
| Zm00001d029749_P001 | Maize | nucleus | 28.29 | 47.25 |
| Bra004501.1-P | Field mustard | nucleus | 30.48 | 46.8 |
| CDX80053 | Canola | nucleus | 30.48 | 46.8 |
| Zm00001d010077_P001 | Maize | nucleus | 26.54 | 46.72 |
| CDY48008 | Canola | nucleus | 31.14 | 46.71 |
| CDY41564 | Canola | nucleus | 30.26 | 46.46 |
| Os03t0120900-01 | Rice | nucleus | 31.58 | 46.3 |
| CDY27515 | Canola | nucleus | 30.7 | 46.05 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 21.27 | 45.97 |
| AT2G46870.1 | Thale cress | nucleus | 31.14 | 45.81 |
| Zm00001d048815_P001 | Maize | nucleus | 23.25 | 45.69 |
| EER92015 | Sorghum | nucleus | 27.41 | 45.62 |
| Zm00001d047359_P001 | Maize | nucleus | 27.41 | 45.13 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 31.36 | 44.83 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 30.92 | 44.48 |
| CDX67872 | Canola | nucleus | 27.63 | 44.21 |
| Bra000434.1-P | Field mustard | nucleus | 30.04 | 44.19 |
| CDX76605 | Canola | nucleus | 28.29 | 44.18 |
| CDY11388 | Canola | nucleus | 28.29 | 44.18 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 19.96 | 44.17 |
| CDX83351 | Canola | nucleus | 29.82 | 44.16 |
| AT3G61970.1 | Thale cress | nucleus | 28.95 | 44.15 |
| CDY50908 | Canola | nucleus | 30.48 | 44.13 |
| Bra003482.1-P | Field mustard | nucleus | 27.63 | 44.06 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 31.8 | 43.94 |
| Bra007646.1-P | Field mustard | nucleus | 28.07 | 43.84 |
| PGSC0003DMT400031863 | Potato | nucleus | 38.82 | 43.6 |
| Os06t0107800-02 | Rice | nucleus | 18.86 | 43.22 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 26.32 | 43.17 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 25.66 | 43.01 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 26.97 | 42.71 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 18.2 | 42.56 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 21.93 | 42.55 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 25.66 | 42.55 |
| CDY69432 | Canola | nucleus | 25.88 | 42.45 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 18.42 | 42.42 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 26.75 | 41.92 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 17.98 | 41.84 |
| OQU93364 | Sorghum | nucleus | 30.26 | 41.82 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 18.2 | 41.5 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 17.76 | 41.33 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 26.54 | 41.3 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 25.88 | 41.26 |
| CDY58763 | Canola | nucleus | 28.73 | 41.2 |
| Os10t0537100-00 | Rice | nucleus | 28.07 | 41.03 |
| Bra014415.1-P | Field mustard | nucleus | 28.73 | 40.94 |
| CDY58764 | Canola | nucleus | 28.73 | 40.94 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 30.48 | 40.76 |
| Zm00001d027409_P001 | Maize | nucleus | 29.17 | 40.67 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 19.3 | 40.55 |
| KXG19112 | Sorghum | nucleus | 18.2 | 40.49 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 24.12 | 40.15 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 40.57 | 40.13 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 18.86 | 40.0 |
| Zm00001d035903_P001 | Maize | nucleus | 19.52 | 39.73 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 18.86 | 39.63 |
| Os04t0581400-01 | Rice | nucleus | 25.44 | 39.59 |
| Zm00001d024103_P001 | Maize | nucleus | 19.3 | 39.29 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 18.86 | 39.09 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.61 | 39.0 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 25.22 | 37.83 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 18.2 | 37.05 |
| KRH68988 | Soybean | nucleus | 33.99 | 36.9 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 32.89 | 36.67 |
| KRG97268 | Soybean | nucleus | 33.11 | 36.56 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 22.81 | 36.49 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 33.11 | 36.47 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 32.68 | 36.43 |
| VIT_14s0083g00130.t01 | Wine grape | nucleus | 22.59 | 36.27 |
| KXG19111 | Sorghum | nucleus | 18.86 | 36.13 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 32.68 | 35.99 |
| Os02t0683500-01 | Rice | nucleus | 32.46 | 35.92 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 32.02 | 35.7 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 32.02 | 35.7 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 31.58 | 35.64 |
| Zm00001d002562_P001 | Maize | nucleus | 31.8 | 35.45 |
| Zm00001d026005_P001 | Maize | nucleus | 31.36 | 35.4 |
| Zm00001d024545_P001 | Maize | nucleus | 19.3 | 35.34 |
| EES12712 | Sorghum | nucleus | 32.24 | 35.0 |
| EES13386 | Sorghum | nucleus | 19.3 | 34.78 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 25.22 | 34.12 |
| Os08t0157700-00 | Rice | nucleus | 21.27 | 33.8 |
| Zm00001d017618_P001 | Maize | nucleus | 30.92 | 33.41 |
| Zm00001d051471_P001 | Maize | nucleus | 30.48 | 33.1 |
| KRH47753 | Soybean | nucleus | 35.96 | 32.8 |
| EES07445 | Sorghum | nucleus | 30.92 | 32.49 |
| VIT_01s0011g03070.t01 | Wine grape | nucleus | 26.1 | 31.48 |
| KRH06334 | Soybean | nucleus | 39.04 | 30.58 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 17.98 | 22.97 |
Protein Annotations
| EntrezGene:100266710 | wikigene:100266710 | MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | ProteinID:CCB58321 |
| ProteinID:CCB58321.1 | InterPro:DNA-bd_pseudobarrel_sf | UniProt:F6HU98 | EMBL:FN596251 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | EntrezGene:LOC100266710 | wikigene:LOC100266710 | PFAM:PF02362 |
| PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0002109E8E |
| ArrayExpress:VIT_02s0025g03000 | EnsemblPlantsGene:VIT_02s0025g03000 | EnsemblPlants:VIT_02s0025g03000.t01 | RefSeq:XP_002271695 | RefSeq:XP_002271695.1 | SEG:seg |
Description
No Description!
Coordinates
chr2:+:2549060..2551345
Molecular Weight (calculated)
50954.3 Da
IEP (calculated)
8.663
GRAVY (calculated)
-0.563
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGTSSHEPN QIIRGSLRRH PPRVRKITHI LLSSISLKIQ LKSEIMDLLP DRDVVCEQEQ VIRGKQLPFS YSSSPSPSSS SSQYRNLVPL PNGGDRWDAQ
101: IQRGWLGHQE DGMRCFEGGA ASKLELMDTS PTNDEDDVVD DDVRRRDSQA LEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED
201: RSGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGVGESG KDRLYIDWRR RPDAPEPSSL AHHFFHRSVP WSPLFLQAPV AGGAVSMGRQ
301: QVQLAQPNYM SHLGGRNPYG SGAYSYNNAV NPCSGSVFYL RPTAPQQVGM VQVQQGGVEP MVFNSVPVVH GKAAAKRLRL FGVNMECPIS ESDECDILSS
401: TSIPHAAVAS QPPHLSSPSS HHHPLQLRLY NGTPLPTLPT NLLNKGKESM SFDLDI
101: IQRGWLGHQE DGMRCFEGGA ASKLELMDTS PTNDEDDVVD DDVRRRDSQA LEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED
201: RSGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGVGESG KDRLYIDWRR RPDAPEPSSL AHHFFHRSVP WSPLFLQAPV AGGAVSMGRQ
301: QVQLAQPNYM SHLGGRNPYG SGAYSYNNAV NPCSGSVFYL RPTAPQQVGM VQVQQGGVEP MVFNSVPVVH GKAAAKRLRL FGVNMECPIS ESDECDILSS
401: TSIPHAAVAS QPPHLSSPSS HHHPLQLRLY NGTPLPTLPT NLLNKGKESM SFDLDI
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.