Factsheet for VIT_11s0037g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93082	Soybean	nucleus	46.5	52.04
Solyc03g083110.1.1	Tomato	nucleus	46.78	49.85
Bra030458.1-P	Field mustard	nucleus	42.02	47.47
AT1G51120.1	Thale cress	nucleus	46.78	47.44
AT1G50680.1	Thale cress	nucleus	43.7	46.29
Bra014282.1-P	Field mustard	nucleus	43.7	46.02
CDY46564	Canola	nucleus	43.42	45.72
Bra018854.1-P	Field mustard	nucleus	43.42	45.59
CDY37130	Canola	nucleus	43.14	45.43
PGSC0003DMT400085602	Potato	nucleus	16.25	45.31
CDY51249	Canola	nucleus	42.86	45.13
CDY22814	Canola	nucleus	42.3	44.81
Bra018894.1-P	Field mustard	nucleus	42.3	44.67
CDY35575	Canola	nucleus	43.14	44.64
CDY29620	Canola	nucleus	42.86	44.48
CDY22826	Canola	nucleus	42.02	44.38
Bra018869.1-P	Field mustard	nucleus	41.46	44.31
CDY65812	Canola	nucleus	34.73	44.13
Bra018868.1-P	Field mustard	nucleus	41.46	43.79
Bra030476.1-P	Field mustard	nucleus	39.78	43.69
CDY29599	Canola	nucleus	39.5	43.38
CDY37109	Canola	nucleus	40.34	43.24
CDY25209	Canola	nucleus	42.86	43.1
CDY37108	Canola	nucleus, plastid	40.62	42.27
CDY22801	Canola	nucleus	40.9	41.95
GSMUA_Achr11P...	Banana	nucleus	33.33	35.42
GSMUA_Achr8P14650_001	Banana	nucleus	40.9	35.27
VIT_14s0083g00130.t01	Wine grape	nucleus	27.73	34.86
PGSC0003DMT400092316	Potato	nucleus	12.04	32.33
Solyc12g098460.1.1	Tomato	nucleus	18.49	31.58
VIT_01s0011g03070.t01	Wine grape	nucleus	31.65	29.89
PGSC0003DMT400040900	Potato	nucleus	10.08	23.53
Zm00001d024354_P001	Maize	nucleus, plastid	17.65	22.11
EES14747	Sorghum	plastid	16.53	21.15
VIT_08s0007g02810.t01	Wine grape	nucleus	16.81	21.05
VIT_15s0048g02370.t01	Wine grape	nucleus	24.93	19.31
Os02t0455800-01	Rice	nucleus	14.01	18.73
KXG24821	Sorghum	nucleus	14.85	18.6
VIT_02s0025g03000.t01	Wine grape	nucleus	22.97	17.98
Os02t0455900-00	Rice	nucleus	12.89	16.91

Protein Annotations

EntrezGene:100250084	wikigene:100250084	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	ProteinID:CCB59746	ProteinID:CCB59746.1	InterPro:DNA-bd_dom_sf
InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HYI2	EMBL:FN596499	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	EntrezGene:LOC100250084
wikigene:LOC100250084	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF17	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI00019844E3
ArrayExpress:VIT_11s0037g00010	EnsemblPlantsGene:VIT_11s0037g00010	EnsemblPlants:VIT_11s0037g00010.t01	unigene:Vvi.21520	RefSeq:XP_002276492	RefSeq:XP_002276492.1

Description

No Description!

Coordinates

chr11:-:7603337..7604681

Molecular Weight (calculated)

40607.7 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.648

Length

357 amino acids

Sequence
(BLAST)

001: MEEEILSVIS NGGTNVIVEA SDSNSSSLPF HGSKRTKQGI SVSSGRFKGV VPQQNGHWGA QIYANHQRIW LGTYKSETEA AMAYDSAAIK LRSGDNHRNF
101: PWTNLTIQEP NFQSFFSTET VVNMIKDGSY PSKFAEFLKT ESQRGETEVL SLDQVGVHRN GRFMCRLLFQ KELTPSDVGK LNRLVIPKKY ATKHFPPISE
201: SAEENEVGGA AADMQLVFYD RLMRLWKFRY CYWRSSQSYV FTRGWNRFVK DKELNENDIV TFYLCEYGQG TKEGRTFCMI DVAYDRSTDG RDANNGSFVE
301: GPNRYVGLQI ELQQDLKQNI GYNKHERKSQ EEEESVGTEP ALEGQKKGLR LFGVQIG

Best Arabidopsis Sequence Match ( AT1G51120.1 )
(BLAST)

001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ

Arabidopsis Description

AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.