Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030476.1-P | Field mustard | nucleus | 96.09 | 83.08 |
| CDY29599 | Canola | nucleus | 95.73 | 82.77 |
| CDY29620 | Canola | nucleus | 64.41 | 52.62 |
| CDY35575 | Canola | nucleus | 64.06 | 52.17 |
| CDY37109 | Canola | nucleus | 60.5 | 51.05 |
| CDY51249 | Canola | nucleus | 61.57 | 51.03 |
| CDY46564 | Canola | nucleus | 61.57 | 51.03 |
| CDY37130 | Canola | nucleus | 61.57 | 51.03 |
| CDY22814 | Canola | nucleus | 60.85 | 50.74 |
| CDY22826 | Canola | nucleus | 58.72 | 48.82 |
| CDY37108 | Canola | nucleus, plastid | 57.65 | 47.23 |
| CDY25209 | Canola | nucleus | 58.01 | 45.92 |
| CDY22801 | Canola | nucleus | 55.16 | 44.54 |
| KRG93082 | Soybean | nucleus | 45.2 | 39.81 |
| Solyc03g083110.1.1 | Tomato | nucleus | 42.35 | 35.52 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 44.13 | 34.73 |
| PGSC0003DMT400085602 | Potato | nucleus | 12.81 | 28.12 |
| CDY72302 | Canola | nucleus | 31.67 | 27.3 |
| CDX97996 | Canola | nucleus | 31.32 | 27.08 |
| CDY58354 | Canola | nucleus | 31.32 | 26.99 |
| CDY61361 | Canola | nucleus | 31.32 | 26.91 |
| CDY67348 | Canola | nucleus | 14.23 | 26.67 |
| CDY40973 | Canola | nucleus | 29.54 | 26.35 |
| GSMUA_Achr11P... | Banana | nucleus | 31.32 | 26.19 |
| CDX81561 | Canola | nucleus | 31.67 | 25.95 |
| CDY45849 | Canola | nucleus, plastid | 32.03 | 25.71 |
| CDY24391 | Canola | nucleus | 30.25 | 25.15 |
| CDX99755 | Canola | nucleus | 29.54 | 24.41 |
| CDY36099 | Canola | nucleus | 30.25 | 24.29 |
| CDY16133 | Canola | nucleus | 30.61 | 24.02 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 35.23 | 23.91 |
| CDX84999 | Canola | nucleus | 29.89 | 23.73 |
| PGSC0003DMT400092316 | Potato | nucleus | 11.03 | 23.31 |
| CDX84162 | Canola | nucleus | 19.22 | 22.22 |
| CDY43751 | Canola | nucleus | 19.22 | 22.22 |
| Solyc12g098460.1.1 | Tomato | nucleus | 16.37 | 22.01 |
| CDX75073 | Canola | nucleus | 19.22 | 21.77 |
| CDX83547 | Canola | nucleus | 24.91 | 21.6 |
| CDY43060 | Canola | cytosol | 12.1 | 20.86 |
| CDX73868 | Canola | nucleus | 17.44 | 20.76 |
| CDY62470 | Canola | nucleus | 16.73 | 20.61 |
| CDY08512 | Canola | nucleus | 17.79 | 20.16 |
| CDY01036 | Canola | nucleus | 17.79 | 19.46 |
| CDY47260 | Canola | nucleus | 17.79 | 18.73 |
| CDX80996 | Canola | nucleus | 17.79 | 18.18 |
| CDY69432 | Canola | nucleus | 16.73 | 16.91 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 17.08 | 16.84 |
| CDX67872 | Canola | nucleus | 16.73 | 16.49 |
| CDX76605 | Canola | nucleus | 16.73 | 16.1 |
| CDY11388 | Canola | nucleus | 16.73 | 16.1 |
| CDX98911 | Canola | nucleus | 13.52 | 15.9 |
| CDY70080 | Canola | nucleus | 13.52 | 15.9 |
| CDY41564 | Canola | nucleus | 16.73 | 15.82 |
| EES14747 | Sorghum | plastid | 15.66 | 15.77 |
| CDX80053 | Canola | nucleus | 16.37 | 15.49 |
| CDY48008 | Canola | nucleus | 16.73 | 15.46 |
| CDY07140 | Canola | nucleus | 16.73 | 15.36 |
| Os02t0455800-01 | Rice | nucleus | 14.59 | 15.36 |
| CDX83351 | Canola | nucleus | 16.73 | 15.26 |
| CDY50908 | Canola | nucleus | 17.08 | 15.24 |
| CDY15208 | Canola | nucleus | 17.44 | 15.22 |
| CDY27515 | Canola | nucleus | 16.37 | 15.13 |
| CDY49614 | Canola | nucleus | 16.37 | 14.84 |
| CDX90001 | Canola | nucleus | 18.15 | 14.83 |
| CDY58763 | Canola | nucleus | 16.73 | 14.78 |
| CDX97251 | Canola | nucleus | 17.79 | 14.75 |
| Os02t0455900-00 | Rice | nucleus | 14.23 | 14.71 |
| CDY58764 | Canola | nucleus | 16.73 | 14.69 |
| KXG24821 | Sorghum | nucleus | 14.23 | 14.04 |
| PGSC0003DMT400040900 | Potato | nucleus | 5.69 | 10.46 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078JKD8 | UniProt:A0A078JKD8 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY65812 | ProteinID:CDY65812 | ProteinID:CDY65812.1 |
| InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00048280001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | PFAM:PF00847 |
| PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 | SMART:SM00380 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0004EF118B | SEG:seg | : |
Description
BnaC05g51390DBnaC05g51390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKD8]
Coordinates
chrLK034961:+:10109..10954
Molecular Weight (calculated)
32117.2 Da
IEP (calculated)
9.516
GRAVY (calculated)
-0.515
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MTETSTSSNP VLPLKKRKRP VDDTTDNVLA VATKKVAPLG NSKYKGVVEH HRNGHWGAQI YIDHKRIWLG TFKSSVEAAM AYDSASIKLG SFDANCHRNF
101: PLNASTVHEP NFQKGYTTEA VLEMIKDSSY QQKFKDYLSL PFHNVASINL VGSERVQGDQ DSTQYCLTCA ELFRKGLTPS DVGKLNRLVI PKRHAVKYLP
201: FINEREEGEI VEDVEVVFFD KTMKQWKFRY CYWTSSQSFV FTSGWKRFVK TENFVNSKLK EEETKSVENK GGFMLFGVKI Q
101: PLNASTVHEP NFQKGYTTEA VLEMIKDSSY QQKFKDYLSL PFHNVASINL VGSERVQGDQ DSTQYCLTCA ELFRKGLTPS DVGKLNRLVI PKRHAVKYLP
201: FINEREEGEI VEDVEVVFFD KTMKQWKFRY CYWTSSQSFV FTSGWKRFVK TENFVNSKLK EEETKSVENK GGFMLFGVKI Q
001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.