Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g098460.1.1 | Tomato | nucleus | 78.2 | 49.76 |
| PGSC0003DMT400040900 | Potato | nucleus | 46.62 | 40.52 |
| PGSC0003DMT400085602 | Potato | nucleus | 36.09 | 37.5 |
| Bra030458.1-P | Field mustard | nucleus | 31.58 | 13.29 |
| Bra030476.1-P | Field mustard | nucleus | 32.33 | 13.23 |
| CDY29599 | Canola | nucleus | 32.33 | 13.23 |
| Bra014282.1-P | Field mustard | nucleus | 32.33 | 12.68 |
| CDY51249 | Canola | nucleus | 32.33 | 12.68 |
| CDY46564 | Canola | nucleus | 32.33 | 12.68 |
| KRG93082 | Soybean | nucleus | 30.08 | 12.54 |
| CDY22826 | Canola | nucleus | 31.58 | 12.43 |
| Bra018894.1-P | Field mustard | nucleus | 31.58 | 12.43 |
| Bra018868.1-P | Field mustard | nucleus | 31.58 | 12.43 |
| CDY37109 | Canola | nucleus | 30.83 | 12.31 |
| Bra018869.1-P | Field mustard | nucleus | 30.83 | 12.28 |
| CDY29620 | Canola | nucleus | 31.58 | 12.21 |
| CDY35575 | Canola | nucleus | 31.58 | 12.17 |
| CDY22814 | Canola | nucleus | 30.83 | 12.17 |
| AT1G50680.1 | Thale cress | nucleus | 30.83 | 12.17 |
| Bra018854.1-P | Field mustard | nucleus | 30.83 | 12.06 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 32.33 | 12.04 |
| Os02t0455800-01 | Rice | nucleus | 24.06 | 11.98 |
| AT1G51120.1 | Thale cress | nucleus | 31.58 | 11.93 |
| KXG24821 | Sorghum | nucleus | 25.56 | 11.93 |
| CDY25209 | Canola | nucleus | 31.58 | 11.83 |
| CDY37130 | Canola | nucleus | 30.08 | 11.8 |
| CDY37108 | Canola | nucleus, plastid | 30.08 | 11.66 |
| EES14747 | Sorghum | plastid | 24.06 | 11.47 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 24.06 | 11.23 |
| CDY65812 | Canola | nucleus | 23.31 | 11.03 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 33.83 | 10.87 |
| PGSC0003DMT400072354 | Potato | nucleus | 23.31 | 10.76 |
| PGSC0003DMT400023077 | Potato | nucleus | 27.07 | 10.75 |
| PGSC0003DMT400015010 | Potato | nucleus | 24.06 | 10.67 |
| PGSC0003DMT400015011 | Potato | nucleus | 24.81 | 10.54 |
| CDY22801 | Canola | nucleus | 26.32 | 10.06 |
| GSMUA_Achr11P... | Banana | nucleus | 24.06 | 9.52 |
| Os02t0455900-00 | Rice | nucleus | 18.8 | 9.19 |
| PGSC0003DMT400002125 | Potato | nucleus | 27.07 | 9.05 |
| PGSC0003DMT400019296 | Potato | nucleus | 24.81 | 8.89 |
| PGSC0003DMT400031863 | Potato | nucleus | 25.56 | 8.37 |
Protein Annotations
| Gene3D:2.40.330.10 | MapMan:35.2 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M1DPJ9 | PFAM:PF02362 | EnsemblPlantsGene:PGSC0003DMG400041887 |
| PGSC:PGSC0003DMG400041887 | EnsemblPlants:PGSC0003DMT400092316 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF17 | SUPFAM:SSF101936 |
| UniParc:UPI000294F281 | : | : | : | : | : |
Description
AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400041887]
Coordinates
chr12:+:59236733..59237134
Molecular Weight (calculated)
15492.5 Da
IEP (calculated)
9.420
GRAVY (calculated)
-0.284
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVIPRRYAI KYFSHIQHNE EIEFYDSSRN SWKFRFFYCQ SSKKFSFTKG WHKFVRAKSL SARDTIVFNL YEFKNGTNES CNTFVIDVVK NVEGLPMDLA
101: LNPDAVDVDV ALTPVLLFGK QIGWTKTKSG NEV
101: LNPDAVDVDV ALTPVLLFGK QIGWTKTKSG NEV
001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.