Factsheet for Bra018868.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22814	Canola	nucleus	76.33	76.56
Bra030458.1-P	Field mustard	nucleus	63.61	68.04
Bra018854.1-P	Field mustard	nucleus	66.57	66.18
Bra014282.1-P	Field mustard	nucleus	65.09	64.9
AT1G50680.1	Thale cress	nucleus	64.5	64.69
Bra030476.1-P	Field mustard	nucleus	61.83	64.31
AT1G51120.1	Thale cress	nucleus	66.86	64.2
Bra018869.1-P	Field mustard	nucleus	62.43	63.17
Bra018894.1-P	Field mustard	nucleus	60.35	60.35
KRG93082	Soybean	nucleus	44.38	47.02
PGSC0003DMT400085602	Potato	nucleus	16.27	42.97
VIT_11s0037g00010.t01	Wine grape	nucleus	43.79	41.46
Solyc03g083110.1.1	Tomato	nucleus	40.53	40.9
PGSC0003DMT400092316	Potato	nucleus	12.43	31.58
GSMUA_Achr11P...	Banana	nucleus	31.07	31.25
Bra026509.1-P	Field mustard	nucleus	29.29	30.37
Bra038346.1-P	Field mustard	nucleus, plastid	30.77	29.71
Bra026917.1-P	Field mustard	nucleus	29.59	29.41
GSMUA_Achr8P14650_001	Banana	nucleus	35.5	28.99
Bra019821.1-P	Field mustard	nucleus	28.99	28.74
Bra024735.1-P	Field mustard	nucleus	31.36	28.49
Bra011002.1-P	Field mustard	nucleus	30.18	28.41
Solyc12g098460.1.1	Tomato	nucleus	17.46	28.23
Bra005301.1-P	Field mustard	nucleus	18.64	25.4
Bra017262.1-P	Field mustard	nucleus	18.34	25.31
Bra001411.1-P	Field mustard	nucleus	17.46	25.0
Bra034828.1-P	Field mustard	nucleus	18.05	23.64
Bra005886.1-P	Field mustard	nucleus	17.16	21.72
Bra041023.1-P	Field mustard	nucleus	16.86	21.59
Zm00001d024354_P001	Maize	nucleus, plastid	17.75	21.05
Bra003482.1-P	Field mustard	nucleus	17.46	20.63
Bra007646.1-P	Field mustard	nucleus	17.75	20.55
PGSC0003DMT400040900	Potato	nucleus	9.17	20.26
Bra004501.1-P	Field mustard	nucleus	17.75	20.2
Bra040478.1-P	Field mustard	nucleus	17.16	19.8
Bra000434.1-P	Field mustard	nucleus	17.75	19.35
Os02t0455800-01	Rice	nucleus	15.09	19.1
EES14747	Sorghum	plastid	15.68	19.0
Bra037417.1-P	Field mustard	nucleus	16.86	18.39
Bra033294.1-P	Field mustard	nucleus	18.64	18.31
Bra014415.1-P	Field mustard	nucleus	17.16	18.12
Bra030497.1-P	Field mustard	nucleus	18.93	18.08
Bra008552.1-P	Field mustard	nucleus	17.75	17.75
KXG24821	Sorghum	nucleus	14.5	17.19
Os02t0455900-00	Rice	nucleus	13.31	16.54
Bra009171.1-P	Field mustard	nucleus	11.54	16.32

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra018868	EnsemblPlants:Bra018868.1	EnsemblPlants:Bra018868.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4DQS5	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF13	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000253EA81	SEG:seg	:	:	:

Description

AT1G50680 (E=8e-099) | AP2 domain-containing transcription factor, putative

Coordinates

chrA06:+:1524659..1525675

Molecular Weight (calculated)

38713.8 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.648

Length

338 amino acids

Sequence
(BLAST)

001: MNTEDAKTES PTVSSGCFLP LKKRMKLHNN PPNNALEVVV SGSAKYKGVV QLPNGHWGAQ IYTDHKRIWL GTFRSAAVAA AAYDSASIKI RSYDANMHRN
101: FPWSEYTVHE PAFQNEHTTE AVLSMIKDGT YQRKYREFLK KVQSKIVGGY NMVGSKQDQE SKKGFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL
201: RDDQKEREEG EIVEDVEVVF YDRGMRQWKF RYCYWRSSQS FVFTSGWNGF VKEKSLKEKD AIVFYTCDVP TLEGQRKKFL MIDVHCSSDE GSAVCDEEVN
301: ETGGVKTENF SNSKLEEEEE TKSVENKGGF MLFGVRIQ

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.