Factsheet for Bra019821.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97996	Canola	nucleus	95.31	100.0
CDY61361	Canola	nucleus	95.01	99.08
Bra026917.1-P	Field mustard	nucleus	89.74	90.0
AT1G13260.1	Thale cress	nucleus	90.32	89.53
Bra026509.1-P	Field mustard	nucleus	69.21	72.39
Bra038346.1-P	Field mustard	nucleus, plastid	64.22	62.57
Bra024735.1-P	Field mustard	nucleus	67.16	61.56
Bra011002.1-P	Field mustard	nucleus	64.52	61.28
GSMUA_Achr5P09950_001	Banana	nucleus	55.72	59.01
VIT_01s0011g03070.t01	Wine grape	nucleus	64.52	58.2
GSMUA_Achr1P05400_001	Banana	nucleus	50.73	58.05
KRH34761	Soybean	nucleus	58.94	57.27
GSMUA_Achr4P03670_001	Banana	nucleus	48.97	56.8
KRH75484	Soybean	nucleus	62.76	55.73
KRG92025	Soybean	nucleus	58.94	55.52
GSMUA_Achr3P29380_001	Banana	nucleus	42.82	55.51
Solyc05g009790.1.1	Tomato	nucleus	64.22	55.44
PGSC0003DMT400002125	Potato	nucleus	64.52	55.28
KRH70603	Soybean	nucleus	63.64	54.11
GSMUA_Achr10P...	Banana	nucleus	45.75	53.42
GSMUA_Achr2P22560_001	Banana	nucleus	48.09	52.9
GSMUA_Achr6P09880_001	Banana	nucleus	43.99	51.9
TraesCS3D01G260100.1	Wheat	nucleus	55.72	50.8
Os05t0549800-01	Rice	nucleus	50.44	50.15
TraesCS3A01G259900.1	Wheat	nucleus	55.13	50.13
TraesCS3B01G293000.1	Wheat	nucleus	55.43	49.35
Zm00001d009468_P001	Maize	nucleus, plastid	54.25	49.33
GSMUA_Achr4P06710_001	Banana	nucleus	50.44	49.14
Zm00001d043782_P001	Maize	nucleus	56.01	49.1
Os01t0693400-01	Rice	nucleus	56.3	48.85
HORVU4Hr1G074300.4	Barley	nucleus	21.41	48.67
HORVU3Hr1G064590.1	Barley	nucleus	27.57	48.45
HORVU3Hr1G064640.4	Barley	nucleus	53.96	48.42
GSMUA_Achr9P21470_001	Banana	nucleus	43.99	48.39
TraesCS1D01G378900.1	Wheat	nucleus	54.84	47.7
KXG22484	Sorghum	nucleus, plastid	56.89	47.55
Zm00001d038907_P001	Maize	nucleus, plastid	56.3	47.29
TraesCS1A01G372300.1	Wheat	nucleus	54.25	47.19
TraesCS1B01G392300.1	Wheat	nucleus	53.96	47.06
HORVU1Hr1G082670.6	Barley	nucleus	53.96	46.82
EES03472	Sorghum	nucleus, plastid	56.6	46.73
GSMUA_AchrUn_...	Banana	nucleus	50.73	46.26
Zm00001d011639_P001	Maize	nucleus	54.25	45.68
TraesCS1B01G392000.1	Wheat	nucleus	53.96	44.77
TraesCS1D01G378400.1	Wheat	nucleus	53.67	44.42
TraesCS1A01G372200.1	Wheat	nucleus	53.37	44.07
TraesCS1D01G378500.1	Wheat	nucleus	53.96	43.91
TraesCS1D01G378800.1	Wheat	nucleus	53.08	43.61
TraesCS1B01G392200.1	Wheat	nucleus, plastid	53.08	43.51
TraesCS1A01G372100.1	Wheat	nucleus	52.49	40.5
GSMUA_Achr3P21100_001	Banana	nucleus	47.8	39.56
Bra017262.1-P	Field mustard	nucleus	26.69	37.14
Bra005301.1-P	Field mustard	nucleus	25.81	35.48
Bra001411.1-P	Field mustard	nucleus	24.05	34.75
Bra034828.1-P	Field mustard	nucleus	24.63	32.56
Bra041023.1-P	Field mustard	nucleus	24.93	32.2
Bra030458.1-P	Field mustard	nucleus	29.62	31.96
Bra005886.1-P	Field mustard	nucleus	24.63	31.46
Bra030476.1-P	Field mustard	nucleus	29.33	30.77
Bra004501.1-P	Field mustard	nucleus	26.39	30.3
Bra040478.1-P	Field mustard	nucleus	25.81	30.03
Bra014282.1-P	Field mustard	nucleus	29.62	29.79
Bra018894.1-P	Field mustard	nucleus	29.03	29.29
Bra018854.1-P	Field mustard	nucleus	29.03	29.12
Bra003482.1-P	Field mustard	nucleus	24.34	29.02
Bra018868.1-P	Field mustard	nucleus	28.74	28.99
Bra000434.1-P	Field mustard	nucleus	25.81	28.39
Bra007646.1-P	Field mustard	nucleus	24.05	28.08
Bra018869.1-P	Field mustard	nucleus	26.69	27.25
Bra008552.1-P	Field mustard	nucleus	26.1	26.33
Bra033294.1-P	Field mustard	nucleus	26.1	25.87
Bra030497.1-P	Field mustard	nucleus	26.69	25.71
Bra014415.1-P	Field mustard	nucleus	24.05	25.62
Bra037417.1-P	Field mustard	nucleus	22.29	24.52
Bra009171.1-P	Field mustard	nucleus	15.84	22.59

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra019821	EnsemblPlants:Bra019821.1	EnsemblPlants:Bra019821.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4DTH8	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000253EBEF	SEG:seg	:	:	:

Description

AT1G13260 (E=7e-161) RAV1 | RAV1; DNA binding / transcription factor/ transcription repressor

Coordinates

chrA06:-:4204136..4205161

Molecular Weight (calculated)

38090.5 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.623

Length

341 amino acids

Sequence
(BLAST)

001: MEVSSVDEST TSTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA
101: VYRFRGRDAV TNFKEARLDD GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTLTSSLNG DGVSTTEFRS AEALFEKAVT PSDVGKLNRL
201: VIPKHHAEKH FPLPSSNVSV KGVLLNFEDV TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLLAGDVVS FSRSEGQDQQ LYIGWKSRSG PDVETGRVLR
301: LFGVNISPES SRTEVVGSKR VNDTEMLSLV CSKKQRIFHA S

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.