Factsheet for GSMUA_Achr4P03670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29380_001	Banana	nucleus	57.14	63.88
GSMUA_Achr9P21470_001	Banana	nucleus	62.93	59.68
GSMUA_Achr4P06710_001	Banana	nucleus	65.65	55.14
GSMUA_Achr10P...	Banana	nucleus	54.08	54.45
GSMUA_Achr5P09950_001	Banana	nucleus	58.84	53.73
CDX97996	Canola	nucleus	56.8	51.38
CDY61361	Canola	nucleus	56.8	51.07
CDY72302	Canola	nucleus	56.12	50.61
CDY58354	Canola	nucleus	55.78	50.31
Bra019821.1-P	Field mustard	nucleus	56.8	48.97
Bra026917.1-P	Field mustard	nucleus	56.46	48.82
AT1G13260.1	Thale cress	nucleus	56.8	48.55
CDY40973	Canola	nucleus	50.34	46.98
AT3G25730.1	Thale cress	nucleus	53.06	46.85
CDY24391	Canola	nucleus	53.74	46.75
KRH34761	Soybean	nucleus	55.78	46.72
CDX83547	Canola	nucleus	51.36	46.6
GSMUA_Achr1P21250_001	Banana	nucleus	46.6	46.6
GSMUA_Achr1P05400_001	Banana	nucleus	46.6	45.97
AT1G68840.1	Thale cress	nucleus	54.76	45.74
KRG92025	Soybean	nucleus	56.12	45.58
VIT_01s0011g03070.t01	Wine grape	nucleus	58.5	45.5
CDX84999	Canola	nucleus	54.76	45.48
CDX99755	Canola	nucleus	52.38	45.29
Bra026509.1-P	Field mustard	nucleus	50.0	45.09
GSMUA_Achr6P01420_001	Banana	nucleus	48.3	44.94
KRH75484	Soybean	nucleus	58.5	44.79
CDY16133	Canola	nucleus	54.08	44.41
CDY36099	Canola	nucleus	52.72	44.29
AT1G25560.1	Thale cress	nucleus	54.08	44.04
CDX81561	Canola	nucleus	51.36	44.02
GSMUA_Achr6P09880_001	Banana	nucleus	42.86	43.6
Bra038346.1-P	Field mustard	nucleus, plastid	51.7	43.43
CDY45849	Canola	nucleus, plastid	51.7	43.43
Bra024735.1-P	Field mustard	nucleus	54.76	43.28
PGSC0003DMT400002125	Potato	nucleus	58.5	43.22
Bra011002.1-P	Field mustard	nucleus	52.72	43.18
Solyc05g009790.1.1	Tomato	nucleus	57.82	43.04
GSMUA_Achr2P22560_001	Banana	nucleus	45.24	42.9
KRH70603	Soybean	nucleus	58.5	42.89
GSMUA_AchrUn_...	Banana	nucleus	50.34	39.57
GSMUA_Achr3P21100_001	Banana	nucleus	46.26	33.01
GSMUA_Achr9P02600_001	Banana	nucleus	18.71	28.5
GSMUA_Achr3P19210_001	Banana	nucleus	18.71	27.36
GSMUA_Achr6P35600_001	Banana	nucleus	20.07	24.38
GSMUA_Achr4P26430_001	Banana	nucleus	20.41	24.0
GSMUA_Achr4P30170_001	Banana	nucleus	20.07	23.69
GSMUA_Achr6P13140_001	Banana	nucleus	19.05	22.67
GSMUA_Achr1P03600_001	Banana	nucleus	23.81	21.21
GSMUA_Achr11P...	Banana	nucleus	13.27	21.08
GSMUA_Achr9P08980_001	Banana	nucleus	11.56	20.99
GSMUA_Achr4P24970_001	Banana	nucleus	16.33	20.43
GSMUA_Achr7P04630_001	Banana	nucleus	14.29	20.39
GSMUA_AchrUn_...	Banana	cytosol	15.99	19.5
GSMUA_Achr5P12850_001	Banana	nucleus	13.95	19.43
GSMUA_Achr8P14650_001	Banana	nucleus	26.87	19.08
GSMUA_Achr11P...	Banana	nucleus	21.09	18.45
GSMUA_Achr5P20340_001	Banana	nucleus	21.09	18.4
GSMUA_Achr4P12210_001	Banana	nucleus	13.95	18.3
GSMUA_Achr5P10220_001	Banana	nucleus	16.33	17.65
GSMUA_Achr9P18780_001	Banana	nucleus	16.67	17.13
GSMUA_Achr2P00400_001	Banana	nucleus	15.65	15.97
GSMUA_Achr6P18320_001	Banana	nucleus	17.69	15.29
GSMUA_Achr2P10230_001	Banana	nucleus	13.95	13.49

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G03670_001	EnsemblPlants:GSMUA_Achr4P03670_001	EnsemblPlants:GSMUA_Achr4T03670_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0SKT4	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000296DDBC	SEG:seg	:	:	:

Description

AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03670_001]

Coordinates

chr4:+:2928262..2929308

Molecular Weight (calculated)

32835.5 Da

IEP (calculated)

8.853

GRAVY (calculated)

-0.610

Length

294 amino acids

Sequence
(BLAST)

001: MATSSIEEAC EETREWPPVA SKSLQRVASG GSEVIDPEGC VEAEFRKLPS SKYKGVVSQP NGRWGAQIYE KHQRIWLGTF NEEAQAARAY DVAVQRFRGR
101: DAVTNFKPLN DADDEDAAEL FFLDSHTKHE IVDMLRKRTY HNELQQSKRS IGADNKKGIA GGAASKGVLL SFEDGCGKEW RFRYSYWNSS HSYVLTRGWS
201: RFVKEKRLEA GDVVTFQRST GTDKQLFIDA KARSGVQVLR LFGVNIVRGP AAAIGEGGVD DNAVFCTTGK KNRDHITELV SSQGMFKKQR TEAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.