Factsheet for GSMUA_Achr3P21100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22560_001	Banana	nucleus	50.0	66.45
GSMUA_Achr6P09880_001	Banana	nucleus	46.12	65.74
GSMUA_Achr10P...	Banana	nucleus	42.23	59.59
GSMUA_Achr1P21250_001	Banana	nucleus	41.26	57.82
GSMUA_Achr5P09950_001	Banana	nucleus	44.42	56.83
GSMUA_Achr1P05400_001	Banana	nucleus	37.86	52.35
GSMUA_Achr3P29380_001	Banana	nucleus	32.52	50.95
GSMUA_Achr6P01420_001	Banana	nucleus	38.84	50.63
CDX97996	Canola	nucleus	39.56	50.15
CDY61361	Canola	nucleus	39.81	50.15
CDY72302	Canola	nucleus	39.56	50.0
CDY58354	Canola	nucleus	39.56	50.0
CDY40973	Canola	nucleus	37.14	48.57
KRH34761	Soybean	nucleus	41.26	48.43
AT1G68840.1	Thale cress	nucleus	41.02	48.01
Bra026917.1-P	Field mustard	nucleus	39.56	47.94
CDY24391	Canola	nucleus	39.32	47.93
Bra019821.1-P	Field mustard	nucleus	39.56	47.8
CDX81561	Canola	nucleus	39.56	47.52
KRG92025	Soybean	nucleus	41.75	47.51
CDX84999	Canola	nucleus	40.53	47.18
AT1G13260.1	Thale cress	nucleus	39.32	47.09
CDY45849	Canola	nucleus, plastid	39.81	46.86
CDY36099	Canola	nucleus	39.81	46.86
Bra038346.1-P	Field mustard	nucleus, plastid	39.81	46.86
AT3G25730.1	Thale cress	nucleus	37.86	46.85
CDY16133	Canola	nucleus	40.53	46.65
VIT_01s0011g03070.t01	Wine grape	nucleus	42.72	46.56
AT1G25560.1	Thale cress	nucleus	40.78	46.54
KRH75484	Soybean	nucleus	43.2	46.35
GSMUA_Achr4P03670_001	Banana	nucleus	33.01	46.26
CDX99755	Canola	nucleus	38.11	46.18
GSMUA_Achr4P06710_001	Banana	nucleus	39.08	46.0
Bra026509.1-P	Field mustard	nucleus	36.16	45.71
Bra011002.1-P	Field mustard	nucleus	39.81	45.68
Bra024735.1-P	Field mustard	nucleus	40.53	44.89
KRH70603	Soybean	nucleus	43.69	44.89
Solyc05g009790.1.1	Tomato	nucleus	42.72	44.56
PGSC0003DMT400002125	Potato	nucleus	42.72	44.22
GSMUA_AchrUn_...	Banana	nucleus	39.32	43.32
GSMUA_Achr9P21470_001	Banana	nucleus	32.28	42.9
CDX83547	Canola	nucleus	33.74	42.9
GSMUA_Achr9P02600_001	Banana	nucleus	19.17	40.93
GSMUA_Achr3P19210_001	Banana	nucleus	19.66	40.3
GSMUA_Achr6P35600_001	Banana	nucleus	20.15	34.3
GSMUA_Achr4P26430_001	Banana	nucleus	20.63	34.0
GSMUA_Achr4P30170_001	Banana	nucleus	20.15	33.33
GSMUA_Achr7P04630_001	Banana	nucleus	16.5	33.01
GSMUA_Achr9P08980_001	Banana	nucleus	12.86	32.72
GSMUA_Achr5P12850_001	Banana	nucleus	16.5	32.23
GSMUA_Achr6P13140_001	Banana	nucleus	18.93	31.58
GSMUA_Achr11P...	Banana	nucleus	13.59	30.27
GSMUA_Achr4P24970_001	Banana	nucleus	16.99	29.79
GSMUA_AchrUn_...	Banana	cytosol	16.26	27.8
GSMUA_Achr1P03600_001	Banana	nucleus	21.36	26.67
GSMUA_Achr5P20340_001	Banana	nucleus	21.6	26.41
GSMUA_Achr4P12210_001	Banana	nucleus	14.32	26.34
GSMUA_Achr5P10220_001	Banana	nucleus	16.26	24.63
GSMUA_Achr9P18780_001	Banana	nucleus	16.99	24.48
GSMUA_Achr2P00400_001	Banana	nucleus	16.99	24.31
GSMUA_Achr2P10230_001	Banana	nucleus	17.23	23.36
GSMUA_Achr6P18320_001	Banana	nucleus	18.45	22.35
GSMUA_Achr8P14650_001	Banana	nucleus	22.33	22.22
GSMUA_Achr11P...	Banana	nucleus	17.48	21.43

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G21100_001	EnsemblPlants:GSMUA_Achr3P21100_001	EnsemblPlants:GSMUA_Achr3T21100_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0SGH6	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000295DEB5	SEG:seg	:	:	:

Description

AP2/ERF and B3 domain-containing transcription repressor RAV2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G21100_001]

Coordinates

chr3:-:22129531..22134258

Molecular Weight (calculated)

45421.7 Da

IEP (calculated)

11.134

GRAVY (calculated)

-0.684

Length

412 amino acids

Sequence
(BLAST)

001: MEGSCVDEAP SHSARCQQTP PHAGEALQRM GSGVSAVLDP TPESGMEAVS RKLSSSQYKG VVPQPNGRWG AQIYEKHRRV WLGTFGDEAE ASRAYDVAAQ
101: RFRGRDAITN FKPLSDKRAQ GGGRVVSRRT TPSYLRSARL MLFDKVVTPS DVGKLNRLVI PKQHAEKYFP LESGSSVASK GVLLNFEDAG GRVWRFRYSY
201: WSSSQSFVLT KGWSRFVREK NLKAGDVVTF WRSTGPEKQL FIDWRTDVIA SFRTMTPPPT VNPLRVVKLF GVDISGLLPV NGGDRKRGRE TELFPPSQKL
301: TSMNRRGTRC PTNDEVKQGV GRRRRRRSPR RSFLVLGAEA PTPNSAITTT TTSTSRGIPA GTAKGTGPPN DAMRNVDVGA GRCKNRSSSH DRHVALRFGP
401: DAAGNNRDEE SD

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.