Factsheet for Solyc05g009790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002125	Potato	nucleus	96.46	95.73
VIT_01s0011g03070.t01	Wine grape	nucleus	67.85	70.9
CDX97996	Canola	nucleus	55.19	67.08
CDY61361	Canola	nucleus	55.19	66.67
CDY72302	Canola	nucleus	54.43	65.95
CDY58354	Canola	nucleus	53.92	65.34
KRH34761	Soybean	nucleus	57.47	64.67
AT1G13260.1	Thale cress	nucleus	55.95	64.24
Bra019821.1-P	Field mustard	nucleus	55.44	64.22
KRH75484	Soybean	nucleus	62.28	64.06
Bra026917.1-P	Field mustard	nucleus	54.94	63.82
CDY24391	Canola	nucleus	54.43	63.61
CDX84999	Canola	nucleus	56.71	63.28
KRG92025	Soybean	nucleus	57.97	63.26
CDY40973	Canola	nucleus	50.38	63.17
AT3G25730.1	Thale cress	nucleus	52.91	62.76
KRH70603	Soybean	nucleus	63.29	62.34
AT1G25560.1	Thale cress	nucleus	56.96	62.33
AT1G68840.1	Thale cress	nucleus	55.44	62.22
CDY16133	Canola	nucleus	56.2	62.01
Solyc04g007000.1.1	Tomato	nucleus	58.23	61.83
GSMUA_Achr5P09950_001	Banana	nucleus	50.38	61.8
CDY36099	Canola	nucleus	54.68	61.71
CDX99755	Canola	nucleus	52.91	61.47
Bra011002.1-P	Field mustard	nucleus	55.44	61.0
Bra026509.1-P	Field mustard	nucleus	50.13	60.74
CDX81561	Canola	nucleus	52.66	60.64
Bra024735.1-P	Field mustard	nucleus	56.96	60.48
CDX83547	Canola	nucleus	49.11	59.88
CDY45849	Canola	nucleus, plastid	52.41	59.14
Bra038346.1-P	Field mustard	nucleus, plastid	52.41	59.14
GSMUA_Achr10P...	Banana	nucleus	43.54	58.9
GSMUA_Achr3P29380_001	Banana	nucleus	38.73	58.17
GSMUA_Achr1P05400_001	Banana	nucleus	43.8	58.05
GSMUA_Achr4P03670_001	Banana	nucleus	43.04	57.82
GSMUA_Achr6P09880_001	Banana	nucleus	41.01	56.06
GSMUA_Achr2P22560_001	Banana	nucleus	42.53	54.19
TraesCS3D01G260100.1	Wheat	nucleus	50.38	53.21
TraesCS3A01G259900.1	Wheat	nucleus	50.13	52.8
Os05t0549800-01	Rice	nucleus	45.82	52.77
TraesCS3B01G293000.1	Wheat	nucleus	51.14	52.74
GSMUA_Achr4P06710_001	Banana	nucleus	46.08	52.0
HORVU4Hr1G074300.4	Barley	nucleus	19.75	52.0
Zm00001d043782_P001	Maize	nucleus	50.89	51.67
Os01t0693400-01	Rice	nucleus	51.39	51.65
GSMUA_Achr9P21470_001	Banana	nucleus	40.51	51.61
HORVU3Hr1G064640.4	Barley	nucleus	49.62	51.58
HORVU3Hr1G064590.1	Barley	nucleus	25.06	51.03
Zm00001d009468_P001	Maize	nucleus, plastid	48.1	50.67
TraesCS1D01G378900.1	Wheat	nucleus	50.13	50.51
TraesCS1A01G372300.1	Wheat	nucleus	50.13	50.51
TraesCS1B01G392300.1	Wheat	nucleus	49.87	50.38
GSMUA_AchrUn_...	Banana	nucleus	46.84	49.47
HORVU1Hr1G082670.6	Barley	nucleus	49.11	49.36
KXG22484	Sorghum	nucleus, plastid	50.89	49.26
Zm00001d038907_P001	Maize	nucleus, plastid	50.38	49.01
EES03472	Sorghum	nucleus, plastid	50.89	48.67
TraesCS1B01G392000.1	Wheat	nucleus	50.13	48.18
Zm00001d011639_P001	Maize	nucleus	48.86	47.65
TraesCS1D01G378400.1	Wheat	nucleus	49.11	47.09
TraesCS1A01G372200.1	Wheat	nucleus	49.11	46.97
TraesCS1D01G378500.1	Wheat	nucleus	49.62	46.78
TraesCS1B01G392200.1	Wheat	nucleus, plastid	48.86	46.39
TraesCS1D01G378800.1	Wheat	nucleus	48.61	46.27
TraesCS1A01G372100.1	Wheat	nucleus	48.86	43.67
GSMUA_Achr3P21100_001	Banana	nucleus	44.56	42.72
Solyc08g013700.1.1	Tomato	nucleus	23.54	31.63
Solyc03g083110.1.1	Tomato	nucleus	26.33	31.04
Solyc08g013690.1.1	Tomato	nucleus	24.05	29.32
Solyc10g083210.1.1	Tomato	nucleus	22.78	29.22
Solyc08g083400.2.1	Tomato	nucleus	23.8	28.14
Solyc12g098460.1.1	Tomato	nucleus	14.68	27.75
Solyc09g010230.1.1	Tomato	nucleus	23.29	26.67

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	UniProt:K4BXF3
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc05g009790.1	EnsemblPlants:Solyc05g009790.1.1
UniParc:UPI0002766C62	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3987084..3988271

Molecular Weight (calculated)

44384.8 Da

IEP (calculated)

9.865

GRAVY (calculated)

-0.534

Length

395 amino acids

Sequence
(BLAST)

001: MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSSTTIKLPP ESGLCRMGSG TSVIIDAENG VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF
101: NEENEAARAY DIAAQRFRGR DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY IDELEQSKRL FGFTKDGMIK RKDGLVISSF FGSTNDKVNC
201: KAREQLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK
301: QLYIDFKAKN VGNTSMVVTN QVQAQVQVPL VQMVRLFGVN ICKVPANVSN VVIDNNNNNN NNNMTSWGGG KRRMEMELLT FESCRKKQRV IIDAL

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.