Factsheet for Solyc04g007000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019296	Potato	nucleus	90.32	90.57
Solyc05g009790.1.1	Tomato	nucleus	61.83	58.23
VIT_14s0083g00130.t01	Wine grape	nucleus	44.35	58.1
Solyc03g083110.1.1	Tomato	nucleus	28.49	31.64
Solyc08g013700.1.1	Tomato	nucleus	24.46	30.95
Solyc08g013690.1.1	Tomato	nucleus	25.0	28.7
Solyc10g083210.1.1	Tomato	nucleus	23.66	28.57
Solyc08g083400.2.1	Tomato	nucleus	24.46	27.25
Solyc12g098460.1.1	Tomato	nucleus	14.52	25.84
Solyc09g010230.1.1	Tomato	nucleus	23.92	25.8

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	ProteinID:ABY57634.1	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	UniProt:E1U2K4	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300
InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g007000.1
EnsemblPlants:Solyc04g007000.1.1	UniParc:UPI0001E55F64	SEG:seg	:	:	:

Description

RAV1 [Source:UniProtKB/TrEMBL;Acc:E1U2K4]

Coordinates

chr4:+:728928..730046

Molecular Weight (calculated)

42224.2 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.559

Length

372 amino acids

Sequence
(BLAST)

001: MEVSCIDQEI STTSDSPSTI SPAGSPRQMG SGVSVVTDAD STNGVEAESK NTTITNNNNN KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA
101: ARAYDIAAQR FRGRDAVTNF KPLFDFQTEE IEISFLNSRS KVEIVEMLRK HTYNDELQHA KKVYNNNTFE MNGRSTCHTN TNIATFSLDT NEKVANIASE
201: LLFEKVVTPS DVGKLNRLVI PKQHAERYFP LVAKVNKNDN TSKGVLLNFE DMNGKMWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCSGVE
301: IEDKLLIDSK NRIIRGEQVK MVRLFGVNIC KVQDVSNNVV VEKNMSVGKR MREMELLAFE CSKKQRVIID AL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.