CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70603	Soybean	nucleus	91.67	87.78
KRH34761	Soybean	nucleus	67.45	73.79
KRG92025	Soybean	nucleus	67.97	72.1
CDX97996	Canola	nucleus	55.47	65.54
CDY61361	Canola	nucleus	55.21	64.83
CDY72302	Canola	nucleus	54.95	64.72
GSMUA_Achr5P09950_001	Banana	nucleus	53.91	64.29
CDX84999	Canola	nucleus	59.11	64.12
CDY58354	Canola	nucleus	54.43	64.11
CDY24391	Canola	nucleus	56.25	63.91
CDY16133	Canola	nucleus	59.38	63.69
AT1G13260.1	Thale cress	nucleus	56.77	63.37
AT1G25560.1	Thale cress	nucleus	59.38	63.16
CDY36099	Canola	nucleus	57.29	62.86
PGSC0003DMT400002125	Potato	nucleus	65.1	62.81
Bra019821.1-P	Field mustard	nucleus	55.73	62.76
Bra026917.1-P	Field mustard	nucleus	55.47	62.65
Solyc05g009790.1.1	Tomato	nucleus	64.06	62.28
AT1G68840.1	Thale cress	nucleus	56.77	61.93
Bra011002.1-P	Field mustard	nucleus	57.55	61.56
Bra024735.1-P	Field mustard	nucleus	59.64	61.56
CDY40973	Canola	nucleus	50.26	61.27
CDX81561	Canola	nucleus	54.17	60.64
AT3G25730.1	Thale cress	nucleus	52.08	60.06
GSMUA_Achr1P05400_001	Banana	nucleus	46.35	59.73
CDY45849	Canola	nucleus, plastid	53.91	59.14
Bra038346.1-P	Field mustard	nucleus, plastid	53.91	59.14
Bra026509.1-P	Field mustard	nucleus	49.74	58.59
CDX99755	Canola	nucleus	51.82	58.53
GSMUA_Achr4P03670_001	Banana	nucleus	44.79	58.5
GSMUA_Achr3P29380_001	Banana	nucleus	39.84	58.17
GSMUA_Achr10P...	Banana	nucleus	43.75	57.53
CDX83547	Canola	nucleus	47.66	56.48
GSMUA_Achr2P22560_001	Banana	nucleus	44.27	54.84
HORVU4Hr1G074300.4	Barley	nucleus	20.83	53.33
GSMUA_Achr6P09880_001	Banana	nucleus	40.1	53.29
TraesCS3D01G260100.1	Wheat	nucleus	51.56	52.94
GSMUA_Achr4P06710_001	Banana	nucleus	48.18	52.86
Os05t0549800-01	Rice	nucleus	46.88	52.48
TraesCS3A01G259900.1	Wheat	nucleus	51.04	52.27
TraesCS3B01G293000.1	Wheat	nucleus	52.08	52.22
Os01t0693400-01	Rice	nucleus	53.39	52.16
HORVU3Hr1G064590.1	Barley	nucleus	26.3	52.06
Zm00001d009468_P001	Maize	nucleus, plastid	50.52	51.73
HORVU3Hr1G064640.4	Barley	nucleus	51.04	51.58
TraesCS1A01G372300.1	Wheat	nucleus	52.6	51.53
Zm00001d043782_P001	Maize	nucleus	52.08	51.41
TraesCS1D01G378900.1	Wheat	nucleus	52.34	51.28
GSMUA_AchrUn_...	Banana	nucleus	49.74	51.07
TraesCS1B01G392300.1	Wheat	nucleus	51.82	50.9
KXG22484	Sorghum	nucleus, plastid	53.65	50.49
HORVU1Hr1G082670.6	Barley	nucleus	51.56	50.38
GSMUA_Achr9P21470_001	Banana	nucleus	40.62	50.32
Zm00001d038907_P001	Maize	nucleus, plastid	52.34	49.51
Zm00001d011639_P001	Maize	nucleus	51.56	48.89
EES03472	Sorghum	nucleus, plastid	52.34	48.67
TraesCS1B01G392000.1	Wheat	nucleus	51.56	48.18
TraesCS1D01G378400.1	Wheat	nucleus	50.78	47.33
TraesCS1A01G372200.1	Wheat	nucleus	50.78	47.22
TraesCS1B01G392200.1	Wheat	nucleus, plastid	50.26	46.39
TraesCS1D01G378500.1	Wheat	nucleus	50.52	46.3
TraesCS1D01G378800.1	Wheat	nucleus	49.74	46.02
TraesCS1A01G372100.1	Wheat	nucleus	50.0	43.44
GSMUA_Achr3P21100_001	Banana	nucleus	46.35	43.2
KRG93082	Soybean	nucleus	26.82	32.29
KRH67965	Soybean	nucleus	22.92	30.56
KRG96220	Soybean	nucleus	22.66	29.1
KRH32791	Soybean	nucleus	22.92	26.11
KRH72242	Soybean	nucleus	23.18	25.87
KRH68988	Soybean	nucleus	26.04	23.81
KRG97268	Soybean	nucleus	25.26	23.49
KRH47753	Soybean	nucleus	26.56	20.4
KRH06334	Soybean	nucleus	29.17	19.24

Protein Annotations

EntrezGene:100776987	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EMBL:ACUP02000359
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_01G087500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1J6Q5	InterPro:IPR001471
InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	EnsemblPlants:KRH75484	ProteinID:KRH75484	ProteinID:KRH75484.1
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI000059867E	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:26422818..26424641

Molecular Weight (calculated)

41909.4 Da

IEP (calculated)

9.599

GRAVY (calculated)

-0.556

Length

384 amino acids

Sequence
(BLAST)

001: MDAISCLDES TTTESLSISQ AKPSSTIMSS EKASPSPPPP NRLCRVGSGA SAVVDSDGGG GGGSTEVESR KLPSSKYKGV VPQPNGRWGS QIYEKHQRVW
101: LGTFNEEDEA ARAYDVAVQR FRGKDAVTNF KPLSGTDDDD GESEFLNSHS KSEIVDMLRK HTYNDELEQS KRSRGFVRRR GSAAGAGNGN SISGACVMKA
201: REQLFQKAVT PSDVGKLNRL VIPKQHAEKH FPLQSAANGV SATATAAKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDTVCFQR
301: STGPDRQLYI DWKTRNVVNE VALFGPVVEP IQMVRLFGVN ILKLPGSDSI ANNNNASGCC NGKRREMELF SLECSKKPKI IGAL

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.