CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67965	Soybean	nucleus	84.62	87.85
KRH32791	Soybean	nucleus	59.53	52.82
KRH72242	Soybean	nucleus	59.2	51.45
AT2G36080.1	Thale cress	nucleus	41.14	50.41
GSMUA_Achr3P19210_001	Banana	nucleus	33.11	49.25
GSMUA_Achr9P02600_001	Banana	nucleus	31.77	49.22
CDX84162	Canola	nucleus	39.8	48.97
CDY43751	Canola	nucleus	39.8	48.97
Bra017262.1-P	Field mustard	nucleus	39.8	48.57
VIT_08s0007g02810.t01	Wine grape	nucleus	46.15	48.42
CDX75073	Canola	nucleus	39.8	47.98
Bra005301.1-P	Field mustard	nucleus	39.46	47.58
Bra001411.1-P	Field mustard	nucleus	35.12	44.49
CDX73868	Canola	nucleus	35.12	44.49
CDY62470	Canola	nucleus	33.44	43.86
GSMUA_Achr6P35600_001	Banana	nucleus	35.12	43.39
CDY08512	Canola	nucleus	35.79	43.15
CDY01036	Canola	nucleus	36.79	42.8
TraesCS5B01G126200.1	Wheat	nucleus	37.12	41.89
Bra034828.1-P	Field mustard	nucleus	36.12	41.86
TraesCS2A01G460700.1	Wheat	nucleus	37.12	41.73
TraesCS5A01G127100.1	Wheat	nucleus	37.12	41.73
KXG27771	Sorghum	nucleus	38.13	41.61
TraesCS5D01G134700.1	Wheat	nucleus	36.79	41.35
GSMUA_Achr6P13140_001	Banana	nucleus	34.11	41.3
Bra041023.1-P	Field mustard	nucleus	36.45	41.29
AT5G06250.4	Thale cress	nucleus	38.8	40.85
TraesCS2B01G482400.1	Wheat	nucleus	36.45	40.82
Bra005886.1-P	Field mustard	nucleus	36.45	40.82
CDY47260	Canola	nucleus	36.45	40.82
TraesCS2D01G460900.1	Wheat	nucleus	36.45	40.82
TraesCS4A01G198300.2	Wheat	nucleus	37.79	40.5
TraesCS4B01G117100.1	Wheat	nucleus	37.46	40.14
Os11t0156000-01	Rice	nucleus	37.46	40.14
GSMUA_Achr9P08980_001	Banana	nucleus	21.74	40.12
TraesCS4D01G114900.1	Wheat	nucleus	37.79	40.07
Zm00001d023446_P001	Maize	nucleus	36.12	38.16
HORVU4Hr1G021650.22	Barley	nucleus	35.12	37.63
Solyc09g010230.1.1	Tomato	nucleus	43.14	37.39
GSMUA_Achr11P...	Banana	nucleus	23.08	37.3
CDX80996	Canola	nucleus	33.11	36.0
HORVU5Hr1G040620.4	Barley	nucleus	32.78	35.77
KXG22988	Sorghum	plastid	37.79	35.31
Zm00001d052591_P001	Maize	nucleus	36.12	35.18
PGSC0003DMT400023077	Potato	nucleus	39.13	34.93
CDX98911	Canola	nucleus	27.09	33.89
CDY70080	Canola	nucleus	27.09	33.89
Bra009171.1-P	Field mustard	nucleus	26.76	33.47
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	37.79	30.46
Os12t0157000-01	Rice	cytosol, nucleus	18.06	25.71
KRG97268	Soybean	nucleus	35.45	25.67
KRH34761	Soybean	nucleus	29.77	25.36
KRH68988	Soybean	nucleus	35.45	25.24
KRG92025	Soybean	nucleus	29.1	24.03
GSMUA_Achr6P18320_001	Banana	nucleus	26.09	22.94
KRH75484	Soybean	nucleus	29.1	22.66
KRH70603	Soybean	nucleus	29.77	22.19
KRH47753	Soybean	nucleus	33.78	20.2
KRG93082	Soybean	nucleus	21.07	19.75
KRH06334	Soybean	nucleus	34.78	17.87

Protein Annotations

EntrezGene:100781153	MapMan:15.5.5.3	Gene3D:2.40.330.10	EMBL:ACUP02012147	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlantsGene:GLYMA_19G196600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:K7MZA2	EnsemblPlants:KRG96220	ProteinID:KRG96220	ProteinID:KRG96220.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000233E2F1	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:45372696..45374650

Molecular Weight (calculated)

34109.9 Da

IEP (calculated)

6.989

GRAVY (calculated)

-1.069

Length

299 amino acids

Sequence
(BLAST)

001: MSSIHHYSPE TTLYWTSDHQ QQQQQQQQQQ QQAATWLSNS HTPRFNLNED DDEEDDVVVS DKATNNLAQE QEKEAMFEKP LTPSDVGKLN RLVIPKQHAE
101: KYFPLDSSGG DSAAAKGLLL SFEDESGKCW RFRYSYWNSS QSYVLTKGWS RYVKDKRLHA GDVVLFHRHR AHPQRFFISC TRHQPNPNPP AHVSIRSSSY
201: SALPAYPTHH HHHLPFPYQP HSLHAPGGGS QGQNETTPGG NSSSGRVLRL FGVNMECQPD NDNDSQNSTH ECSYTHLYHH QTSSYPSSNP HHHMLPQQP

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.