Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70080 | Canola | nucleus | 100.0 | 100.0 |
| Bra009171.1-P | Field mustard | nucleus | 99.58 | 99.58 |
| CDY47260 | Canola | nucleus | 74.06 | 66.29 |
| AT5G06250.4 | Thale cress | nucleus | 75.31 | 63.38 |
| CDX80996 | Canola | nucleus | 60.25 | 52.36 |
| CDY08512 | Canola | nucleus | 50.63 | 48.79 |
| CDY01036 | Canola | nucleus | 50.63 | 47.08 |
| CDX73868 | Canola | nucleus | 45.61 | 46.19 |
| CDY43751 | Canola | nucleus | 40.59 | 39.92 |
| CDX75073 | Canola | nucleus | 40.17 | 38.71 |
| CDY62470 | Canola | nucleus | 35.56 | 37.28 |
| CDX84162 | Canola | nucleus | 37.66 | 37.04 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 29.71 | 29.34 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 32.22 | 29.06 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 23.43 | 29.02 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 32.22 | 28.95 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 32.22 | 28.95 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 24.27 | 28.86 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 31.8 | 28.57 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 31.8 | 28.46 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 33.89 | 28.42 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 31.38 | 28.09 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 28.87 | 27.94 |
| KRH67965 | Soybean | nucleus | 33.47 | 27.78 |
| KRG96220 | Soybean | nucleus | 33.89 | 27.09 |
| KXG27771 | Sorghum | nucleus | 30.96 | 27.01 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 30.96 | 26.52 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 30.54 | 26.16 |
| CDY67348 | Canola | nucleus | 16.32 | 26.0 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 30.54 | 25.89 |
| KRH32791 | Soybean | nucleus | 35.98 | 25.52 |
| Zm00001d023446_P001 | Maize | nucleus | 30.13 | 25.44 |
| KRH72242 | Soybean | nucleus | 35.56 | 24.71 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 28.45 | 24.37 |
| Solyc09g010230.1.1 | Tomato | nucleus | 34.73 | 24.06 |
| Os11t0156000-01 | Rice | nucleus | 28.03 | 24.01 |
| Zm00001d052591_P001 | Maize | nucleus | 30.13 | 23.45 |
| PGSC0003DMT400023077 | Potato | nucleus | 32.64 | 23.28 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 26.36 | 22.99 |
| GSMUA_Achr11P... | Banana | nucleus | 17.15 | 22.16 |
| CDY43060 | Canola | cytosol | 15.06 | 22.09 |
| KXG22988 | Sorghum | plastid | 29.29 | 21.88 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 14.23 | 20.99 |
| CDY48008 | Canola | nucleus | 25.94 | 20.39 |
| CDY50908 | Canola | nucleus | 26.78 | 20.32 |
| CDX83351 | Canola | nucleus | 25.52 | 19.81 |
| CDY27515 | Canola | nucleus | 25.1 | 19.74 |
| CDX80053 | Canola | nucleus | 23.85 | 19.19 |
| CDY41564 | Canola | nucleus | 23.85 | 19.19 |
| CDY69432 | Canola | nucleus | 21.76 | 18.7 |
| CDX67872 | Canola | nucleus | 22.18 | 18.6 |
| CDX76605 | Canola | nucleus | 22.59 | 18.49 |
| CDY11388 | Canola | nucleus | 22.59 | 18.49 |
| CDY58763 | Canola | nucleus | 23.43 | 17.61 |
| CDY58764 | Canola | nucleus | 23.43 | 17.5 |
| CDY58354 | Canola | nucleus | 23.43 | 17.18 |
| CDY72302 | Canola | nucleus | 23.43 | 17.18 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 14.64 | 16.67 |
| CDX97996 | Canola | nucleus | 22.59 | 16.62 |
| CDY61361 | Canola | nucleus | 22.59 | 16.51 |
| CDX90001 | Canola | nucleus | 23.01 | 15.99 |
| CDY40973 | Canola | nucleus | 20.5 | 15.56 |
| CDX81561 | Canola | nucleus | 22.18 | 15.45 |
| CDY36099 | Canola | nucleus | 22.59 | 15.43 |
| CDY45849 | Canola | nucleus, plastid | 22.59 | 15.43 |
| CDY24391 | Canola | nucleus | 21.76 | 15.38 |
| CDY07140 | Canola | nucleus | 19.25 | 15.03 |
| CDX84999 | Canola | nucleus | 22.18 | 14.97 |
| CDY15208 | Canola | nucleus | 20.08 | 14.91 |
| CDY49614 | Canola | nucleus | 19.25 | 14.84 |
| CDX99755 | Canola | nucleus | 20.92 | 14.71 |
| CDY16133 | Canola | nucleus | 21.34 | 14.25 |
| CDX97251 | Canola | nucleus | 20.08 | 14.16 |
| CDY65812 | Canola | nucleus | 15.9 | 13.52 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 18.83 | 13.24 |
| CDY29620 | Canola | nucleus | 16.74 | 11.63 |
| CDY22814 | Canola | nucleus | 16.32 | 11.57 |
| CDY29599 | Canola | nucleus | 15.48 | 11.38 |
| CDY35575 | Canola | nucleus | 16.32 | 11.3 |
| CDY22826 | Canola | nucleus | 15.9 | 11.24 |
| CDY37130 | Canola | nucleus | 15.9 | 11.21 |
| CDY46564 | Canola | nucleus | 15.9 | 11.21 |
| CDY51249 | Canola | nucleus | 15.9 | 11.21 |
| CDY37109 | Canola | nucleus | 15.48 | 11.11 |
| CDY37108 | Canola | nucleus, plastid | 15.48 | 10.79 |
| CDY25209 | Canola | nucleus | 15.48 | 10.42 |
| CDX83547 | Canola | nucleus | 12.55 | 9.26 |
| CDY22801 | Canola | nucleus | 13.39 | 9.2 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078ECJ9 | UniProt:A0A078ECJ9 | InterPro:B3_DNA-bd | EnsemblPlants:CDX98911 |
| ProteinID:CDX98911 | ProteinID:CDX98911.1 | ProteinID:CDY70080.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00107017001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF2 | SUPFAM:SSF101936 | UniParc:UPI0004EED1BF | SEG:seg | : | : |
Description
BnaC09g49240DBnaC09g49240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ECJ9]
Coordinates
chrLK031907:-:547683..549786
Molecular Weight (calculated)
26495.2 Da
IEP (calculated)
6.261
GRAVY (calculated)
-0.741
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVNHYSTDH HHHHNTLFWQ QLHTTDATET TTATWLNQDQ KESLFEKTLT PSDVGKLNRL VIPKQHAEKY FPLNAISNNA DASTEKGMLL SFEDELGKCW
101: RFRRGQGSSS AVANPTSYSS SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN LECQRDEDDG DDSVAATTAT
201: ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG
101: RFRRGQGSSS AVANPTSYSS SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN LECQRDEDDG DDSVAATTAT
201: ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.