CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96220	Soybean	nucleus	87.85	84.62
KRH32791	Soybean	nucleus	62.15	53.12
KRH72242	Soybean	nucleus	61.11	51.16
AT2G36080.1	Thale cress	nucleus	42.01	49.59
CDX84162	Canola	nucleus	41.32	48.97
CDY43751	Canola	nucleus	40.62	48.15
CDX75073	Canola	nucleus	41.32	47.98
Bra017262.1-P	Field mustard	nucleus	40.62	47.76
VIT_08s0007g02810.t01	Wine grape	nucleus	47.22	47.72
Bra005301.1-P	Field mustard	nucleus	40.97	47.58
GSMUA_Achr9P02600_001	Banana	nucleus	30.9	46.11
GSMUA_Achr3P19210_001	Banana	nucleus	31.94	45.77
CDX73868	Canola	nucleus	36.81	44.92
Bra001411.1-P	Field mustard	nucleus	36.81	44.92
CDY08512	Canola	nucleus	37.85	43.95
CDY62470	Canola	nucleus	34.72	43.86
CDY01036	Canola	nucleus	38.19	42.8
Bra041023.1-P	Field mustard	nucleus	38.89	42.42
Bra034828.1-P	Field mustard	nucleus	37.85	42.25
GSMUA_Achr6P35600_001	Banana	nucleus	35.42	42.15
Bra005886.1-P	Field mustard	nucleus	38.89	41.95
CDY47260	Canola	nucleus	38.89	41.95
AT5G06250.4	Thale cress	nucleus	40.28	40.85
GSMUA_Achr6P13140_001	Banana	nucleus	34.72	40.49
TraesCS5B01G126200.1	Wheat	nucleus	36.81	40.0
TraesCS5D01G134700.1	Wheat	nucleus	36.81	39.85
TraesCS5A01G127100.1	Wheat	nucleus	36.81	39.85
TraesCS4A01G198300.2	Wheat	nucleus	38.54	39.78
KXG27771	Sorghum	nucleus	37.85	39.78
GSMUA_Achr9P08980_001	Banana	nucleus	22.22	39.51
TraesCS2A01G460700.1	Wheat	nucleus	36.46	39.47
TraesCS4B01G117100.1	Wheat	nucleus	38.19	39.43
TraesCS4D01G114900.1	Wheat	nucleus	38.54	39.36
TraesCS2D01G460900.1	Wheat	nucleus	36.11	38.95
TraesCS2B01G482400.1	Wheat	nucleus	36.11	38.95
Solyc09g010230.1.1	Tomato	nucleus	46.18	38.55
Os11t0156000-01	Rice	nucleus	37.15	38.35
Zm00001d023446_P001	Maize	nucleus	37.5	38.16
HORVU4Hr1G021650.22	Barley	nucleus	35.76	36.92
CDX80996	Canola	nucleus	34.72	36.36
GSMUA_Achr11P...	Banana	nucleus	23.26	36.22
PGSC0003DMT400023077	Potato	nucleus	41.32	35.52
Zm00001d052591_P001	Maize	nucleus	37.5	35.18
KXG22988	Sorghum	plastid	37.5	33.75
HORVU5Hr1G040620.4	Barley	nucleus	31.94	33.58
CDX98911	Canola	nucleus	27.78	33.47
CDY70080	Canola	nucleus	27.78	33.47
Bra009171.1-P	Field mustard	nucleus	27.43	33.05
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	39.58	30.73
Os12t0157000-01	Rice	cytosol, nucleus	19.1	26.19
KRH34761	Soybean	nucleus	31.6	25.93
KRG97268	Soybean	nucleus	36.46	25.42
KRH68988	Soybean	nucleus	36.81	25.24
KRG92025	Soybean	nucleus	30.56	24.31
GSMUA_Achr6P18320_001	Banana	nucleus	27.08	22.94
KRH75484	Soybean	nucleus	30.56	22.92
KRH70603	Soybean	nucleus	31.6	22.69
KRH47753	Soybean	nucleus	34.38	19.8
KRG93082	Soybean	nucleus	21.18	19.12
KRH06334	Soybean	nucleus	35.42	17.53

Protein Annotations

EntrezGene:100802734	MapMan:15.5.5.3	Gene3D:2.40.330.10	EMBL:ACUP02002094	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlantsGene:GLYMA_03G199000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:K7KG32	EnsemblPlants:KRH67965	ProteinID:KRH67965	ProteinID:KRH67965.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00023C2468	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:40799586..40801755

Molecular Weight (calculated)

32723.5 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.937

Length

288 amino acids

Sequence
(BLAST)

001: MSSINHYSPE TTLYWTNDQQ QQAAMWLSNS HTPRFNLNDE EEEEEDDVIV SDKATNNLTQ EEEKVAMFEK PLTPSDVGKL NRLVIPKQHA EKHFPLDSSA
101: AKGLLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV LFHRHRSLPQ RFFISCSRRQ PNPVPAHVST TRSSASFYSA HPPYPAHHFP
201: FPYQPHSLHA PGGGSQGQNE TTPGGNSSSS GSGRVLRLFG VNMECQPDNH NDSQNSTPEC SYTHLYHHQT SSYSSSSNPH HHMVPQQP

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.